|
Comparison of the analysis of gene expression by quantitative RT-PCR and microarray |
|||||
| M:F (microarray) |
M:F (RT-PCR) |
||||
|
|
|
||||
| Species and tissue |
Affymetrix number or gene symbol |
Ratio |
P-value |
Ratio |
P-value |
|
|
|||||
| Zebra finch |
|||||
| Adult brain |
FST |
1.7 |
4.0E-04 |
1.8 |
5.0E-04 |
| LUZP1 |
1.6 |
3.7E-03 |
2.4 |
1.0E-06 |
|
| SMARCA2 |
1.4 |
1.7E-03 |
2.1 |
2.0E-06 |
|
| DNAJA1 |
1.3 |
1.6E-03 |
2.0 |
4.6E-05 |
|
| CRHBP |
1.2 |
5.9E-02 |
1.4 |
2.8E-03 |
|
| RPS6 |
1.6 |
2.4E-05 |
2.1 |
1.3E-04 |
|
| P1 brain |
FST |
1.6 |
1.5E-02 |
1.5 |
3.0E-02 |
| LUZP1 |
1.7 |
1.8E-02 |
2.5 |
4.4E-04 |
|
| SMARCA2 |
1.2 |
1.7E-01 |
1.8 |
9.0E-04 |
|
| DNAJA1 |
1.1 |
2.1E-02 |
2.1 |
1.3E-05 |
|
| CRHBP |
ND |
ND |
2.1 |
8.7E-04 |
|
| RPS6 |
1.6 |
2.4E-04 |
2.5 |
3.0E-06 |
|
| Chicken |
|||||
| E14 brain |
Gga.12454.1.S1 |
0.4 |
4.9E-05 |
0.5 |
7.3E-05 |
| GgaAffx.9524 |
1.0 |
0.59 |
1.1 |
0.64 |
|
| GgaAffx.24493 |
1.6 |
5.0E-06 |
1.8 |
1.3E-03 |
|
| Gga.4811 |
1.8 |
9.9E-08 |
2.3 |
2.5E-04 |
|
| GgaAffx.25289 |
2.0 |
1.7E-06 |
2.7 |
9.0E-05 |
|
| Gga.2433 |
2.4 |
1.1E-07 |
2.6 |
2.9E-04 |
|
| Gga.2883 |
2.7 |
1.3E-08 |
2.6 |
1.2E-05 |
|
|
ND, not detected. The P-value is from a t-test comparing males and females. | |||||
Itoh et al. Journal of Biology 2007 6:2 doi:10.1186/jbiol53 |
|||||