Table 3

Comparison of the analysis of gene expression by quantitative RT-PCR and microarray

M:F (microarray)

M:F (RT-PCR)



Species and tissue

Affymetrix number or gene symbol

Ratio

P-value

Ratio

P-value


Zebra finch

Adult brain

FST

1.7

4.0E-04

1.8

5.0E-04

LUZP1

1.6

3.7E-03

2.4

1.0E-06

SMARCA2

1.4

1.7E-03

2.1

2.0E-06

DNAJA1

1.3

1.6E-03

2.0

4.6E-05

CRHBP

1.2

5.9E-02

1.4

2.8E-03

RPS6

1.6

2.4E-05

2.1

1.3E-04

P1 brain

FST

1.6

1.5E-02

1.5

3.0E-02

LUZP1

1.7

1.8E-02

2.5

4.4E-04

SMARCA2

1.2

1.7E-01

1.8

9.0E-04

DNAJA1

1.1

2.1E-02

2.1

1.3E-05

CRHBP

ND

ND

2.1

8.7E-04

RPS6

1.6

2.4E-04

2.5

3.0E-06

Chicken

E14 brain

Gga.12454.1.S1

0.4

4.9E-05

0.5

7.3E-05

GgaAffx.9524

1.0

0.59

1.1

0.64

GgaAffx.24493

1.6

5.0E-06

1.8

1.3E-03

Gga.4811

1.8

9.9E-08

2.3

2.5E-04

GgaAffx.25289

2.0

1.7E-06

2.7

9.0E-05

Gga.2433

2.4

1.1E-07

2.6

2.9E-04

Gga.2883

2.7

1.3E-08

2.6

1.2E-05


ND, not detected. The P-value is from a t-test comparing males and females.

Itoh et al. Journal of Biology 2007 6:2   doi:10.1186/jbiol53

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