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Volume 8 (2009) - December 2009

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Editorial   Open Access Highly Accessed

Top ten in Journal of Biology in 2009: stem cells, influenza, pit bulls, Darwin, and more

Miranda Robertson Journal of Biology 2009, 8:102 (31 December 2009)

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The bacterial pathogen Listeria monocytogenes: an emerging model in prokaryotic transcriptomics

Pascale Cossart, Cristel Archambaud Journal of Biology 2009, 8:107 (30 December 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Cossart and Archambaud discuss the implications of the outcome of deep RNA sequencing used to probe the virulence toolkit of Listeria monocytogenes, reported in a recent paper in BMC Genomics.

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Forward genetics in Tribolium castaneum: opening new avenues of research in arthropod biology

Andrew D Peel Journal of Biology 2009, 8:106 (30 December 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Peel discusses the merits of the flour beetle over the fruit fly as a new arthropod model organism and describes how a new mutagenesis screen published in BMC Biology increases the usefulness of this creature.

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Mapping the protistan 'rare biosphere'

Scott C Dawson, Kari D Hagen Journal of Biology 2009, 8:105 (29 December 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Dawson and Hagen discuss our current underestimation of the ecological complexity of protist communities in the light of a recent paper in BMC Biology that reports an expanded map of microbial diversity using high throughput sequencing strategy.

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Scribble at the crossroads

Sandrine Etienne-Manneville Journal of Biology 2009, 8:104 (29 December 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Etienne-Manneville reviews the intimate link between cell polarity and cell proliferation in the light of a recent study in BMC Biology clarifying the polarity, proliferation and apoptotic pathways downstream of the tumour suppressor Scribble.

Question & Answer   Free

Q&A: Quantitative approaches to planar polarity and tissue organization

Emily Marcinkevicius, Rodrigo Fernandez-Gonzalez, Jennifer A Zallen Journal of Biology 2009, 8:103 (29 December 2009)

Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Zallen and colleagues explain in Q&A format the complex process by which the cells of a tissue establish planar polarity, in which their spatial properties are coordinated, and how failures may be reflected in human developmental defects.

Editorial   Open Access Highly Accessed

Gene regulation, evolvability and the limits of genomics

Miranda Robertson Journal of Biology 2009, 8:94 (24 December 2009)

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The transcriptome of human monocyte subsets begins to emerge

Fernando O Martinez Journal of Biology 2009, 8:99 (23 December 2009)

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Monocytes are circulating cells that can differentiate into macrophages with either repair and maintenance or inflammatory properties. Martinez discusses recent papers, including one published in BMC Genomics, that help define these distinct properties and thus identify therapeutic targets.

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Chromatin 'programming' by sequence - is there more to the nucleosome code than %GC?

Amanda Hughes, Oliver J Rando Journal of Biology 2009, 8:96 (23 December 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

How far is packaging of DNA by nucleosomes directed by DNA sequence? Hughes and Rando discuss this issue in the light of new research in BMC Bioinformatics indicating that nucleosome occupancy is largely determined by the GC content of DNA.

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Fishing for the signals that pattern the face

Thomas F Schilling, Pierre Le Pabic Journal of Biology 2009, 8:101 (22 December 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Craniofacial defects such as cleft lip or palate are common. Schilling and Le Pabic discuss how research on developmental mutants of zebrafish, including one published recently in BMC Developmental Biology, can shed light on craniofacial development.

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Coordinated gene expression by post-transcriptional regulons in African trypanosomes

Marc Ouellette, Barbara Papadopoulou Journal of Biology 2009, 8:100 (14 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Opinion   Free Highly Accessed

Promoter architecture and the evolvability of gene expression

Itay Tirosh, Naama Barkai, Kevin J Verstrepen Journal of Biology 2009, 8:95 (14 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Major evolutionary change depends on changes in gene expression. Itay Tirosh and colleagues review recent research on the influence of promoter architecture and mutations in regulatory proteins on divergent expression patterns and suggest what is required for evolvability.

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Adaptations of proteins to cellular and subcellular pH

Bertrand Garcia-Moreno Journal of Biology 2009, 8:98 (2 December 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Protein function and stability are acutely sensitive to pH, which varies in different subcellular compartments. Garcia-Moreno discusses research recently reported in BMC Biology suggesting that adaptation to different compartments is reflected in charge distribution.


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