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51.
176 Accesses
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Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network
Lan V Zhang, Oliver D King, Sharyl L Wong, Debra S Goldberg, Amy HY Tong, Guillaume Lesage, Brenda Andrews, Howard Bussey, Charles Boone, Frederick P Roth Journal of Biology 2005, 4:6 (1 June 2005)
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| F1000 Biology
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Editor’s summary
The multiple complex biological interactions in a yeast cell can be mapped in a simple graphical form, enhancing our understanding of the networks of interaction by which components of a cell influence one another.
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52.
175 Accesses
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The water flea Daphnia - a 'new' model system for ecology and evolution?
Angelika Stollewerk Journal of Biology 2010, 9:21 (13 January 2010)
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53.
173 Accesses
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Imp-L2, a putative homolog of vertebrate IGF-binding protein 7, counteracts insulin signaling in Drosophila and is essential for starvation resistance
Basil Honegger, Milos Galic, Katja Köhler, Franz Wittwer, Walter Brogiolo, Ernst Hafen, Hugo Stocker Journal of Biology 2008, 7:10 (15 April 2008)
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Editor’s summary
The first functional insulin-binding protein identified in invertebrates, Imp-L2, controls Drosophila body size by regulating insulin-mediated growth and is essential for larval survival and dampening insulin signaling under starvation conditions.
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54.
170 Accesses
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Promoter architecture and the evolvability of gene expression
Itay Tirosh, Naama Barkai, Kevin J Verstrepen Journal of Biology 2009, 8:95 (14 December 2009)
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Editor’s summary
Major evolutionary change depends on changes in gene expression. Itay Tirosh and colleagues review recent research on the influence of promoter architecture and mutations in regulatory proteins on divergent expression patterns and suggest what is required for evolvability.
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55.
171 Accesses
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Metabolic reconfiguration is a regulated response to oxidative stress
Chris M Grant Journal of Biology 2008, 7:1 (25 January 2008)
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56.
170 Accesses
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Dosage compensation is less effective in birds than in mammals
Yuichiro Itoh, Esther Melamed, Xia Yang, Kathy Kampf, Susanna Wang, Nadir Yehya, Atila Van Nas, Kirstin Replogle, Mark R Band, David F Clayton, Eric E Schadt, Aldons J Lusis, Arthur P Arnold Journal of Biology 2007, 6:2 (22 March 2007)
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Editor’s summary
Male:female ratios of gene expression in zebra finch and chicken reveal that birds, unlike mammals, have surprisingly ineffective sex-chromosome dosage compensation mechanisms resulting in an imbalance between autosomal and sex-linked genes.
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57.
165 Accesses
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Notch signaling, the segmentation clock, and the patterning of vertebrate somites
Julian Lewis, Anja Hanisch, Maxine Holder Journal of Biology 2009, 8:44 (22 May 2009)
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Editor’s summary
Julian Lewis and colleagues review the part played by the Notch signaling pathway in the emergence of somites from the embryonic mesoderm and their later differentiation.
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58.
163 Accesses
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Oxidative stress, thermogenesis and evolution of uncoupling proteins
Eduardo Rial, Rafael Zardoya Journal of Biology 2009, 8:58 (16 June 2009)
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59.
164 Accesses
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Generalized immune activation as a direct result of activated CD4+ T cell killing
Rute Marques, Adam Williams, Urszula Eksmond, Andy Wullaert, Nigel Killeen, Manolis Pasparakis, Dimitris Kioussis, George Kassiotis Journal of Biology 2009, 8:93 (27 November 2009)
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Editor’s summary
HIV causes immunodeficiency by deleting activated CD4 T lymphocytes, but paradoxically also causes general immune activation. Kassiotis and colleagues have mimicked this effect by using genetic engineering to delete activated T cells in mice, and show that in the mice it is due to loss of regulatory T cells.
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60.
164 Accesses
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Adaptations of proteins to cellular and subcellular pH
Bertrand Garcia-Moreno Journal of Biology 2009, 8:98 (2 December 2009)
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Editor’s summary
Protein function and stability are acutely sensitive to pH, which varies in different subcellular compartments. Garcia-Moreno discusses research recently reported in BMC Biology suggesting that adaptation to different compartments is reflected in charge distribution.
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61.
164 Accesses
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Transplanted astrocytes derived from BMP- or CNTF-treated glial-restricted precursors have opposite effects on recovery and allodynia after spinal cord injury
Jeannette E Davies, Christoph Pröschel, Ningzhe Zhang, Mark Noble, Margot Mayer-Pröschel, Stephen JA Davies Journal of Biology 2008, 7:24 (19 September 2008)
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Editor’s summary
Glial cells can promote the repair of damaged spinal cord, but experiments in rats show that while some promote functional recovery others cause abnormal growth and pain, depending on the growth factor used to cultivate them in culture.
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62.
162 Accesses
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Mapping the protistan 'rare biosphere'
Scott C Dawson, Kari D Hagen Journal of Biology 2009, 8:105 (29 December 2009)
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Editor’s summary
Dawson and Hagen discuss our current underestimation of the ecological complexity of protist communities in the light of a recent paper in BMC Biology that reports an expanded map of microbial diversity using high throughput sequencing strategy.
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63.
160 Accesses
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Systematic identification of regulatory proteins critical for T-cell activation
Peter Chu, Jorge Pardo, Haoran Zhao, Connie C Li, Erlina Pali, Mary M Shen, Kunbin Qu, Simon X Yu, Betty CB Huang, Peiwen Yu, Esteban S Masuda, Susan M Molineaux, Frank Kolbinger, Gregorio Aversa, Jan de Vries, Donald G Payan, X Charlene Liao Journal of Biology 2003, 2:21 (15 September 2003)
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64.
160 Accesses
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Apical polarity in three-dimensional culture systems: where to now?
Jamie L Inman, Mina J Bissell Journal of Biology 2010, 9:2 (21 January 2010)
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65.
159 Accesses
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Hyperactive Wnt signaling changes the developmental potential of embryonic lung endoderm
Tadashi Okubo, Brigid LM Hogan Journal of Biology 2004, 3:11 (8 June 2004)
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Editor’s summary
Abnormal activation of the Wnt signaling pathway can alter the fate of progenitor cells that normally generate the lung, causing them to create gut cells instead.
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66.
158 Accesses
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Environmental stresses can alleviate the average deleterious effect of mutations
Roy Kishony, Stanislas Leibler Journal of Biology 2003, 2:14 (29 May 2003)
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| F1000 Biology
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67.
157 Accesses
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Genomics technology for assessing soil pollution
Nico M van Straalen, Dick Roelofs Journal of Biology 2008, 7:19 (14 July 2008)
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68.
150 Accesses
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CNS progenitor cells and oligodendrocytes are targets of chemotherapeutic agents in vitro and in vivo
Joerg Dietrich, Ruolan Han, Yin Yang, Margot Mayer-Pröschel, Mark Noble Journal of Biology 2006, 5:22 (30 November 2006)
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Editor’s summary
Chemotherapeutic agents are more toxic to cells of the central nervous system than to cancer cells when administered to mice and cultured cells, providing an explanation for adverse neurological effects of systemic chemotherapy.
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69.
148 Accesses
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Regulation of metabolism in Caenorhabditis elegans longevity
Marco Gallo, Donald L Riddle Journal of Biology 2010, 9:7 (10 February 2010)
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Editor’s summary
A metabolomic quest for universals in the control of lifespan recently reported in BMC Biology implicates branched-chain amino acid pools. Gallo and Riddle review the lessons from C.elegans in research on longevity, and discuss the implications of the metabolomic research.
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70.
147 Accesses
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Adaptation by introgression
Michael L Arnold, Noland H Martin Journal of Biology 2009, 8:82 (13 October 2009)
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71.
146 Accesses
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The cattle genome reveals its secrets
David W Burt Journal of Biology 2009, 8:36 (24 April 2009)
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Editor’s summary
Burt discusses the impact of the recently sequenced Bovine genome on our understanding of bovine phylogeny and the genomics of domestication.
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72.
146 Accesses
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The THO complex as a key mRNP biogenesis factor in development and cell differentiation
Sonia Jimeno, Andrés Aguilera Journal of Biology 2010, 9:6 (28 January 2010)
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Editor’s summary
The THO complex is implicated in RNA export from the nucleus, but exactly how is not clear. Jimeno and Aguilera discuss a new report on the THOC5 subunit in BMC Biology that suggests a role in differentiation.
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73.
145 Accesses
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TBP2 is a general transcription factor specialized for female germ cells
Ferenc Müller, Làszlò Tora Journal of Biology 2009, 8:97 (30 November 2009)
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Editor’s summary
Mueller and Tora discuss a BMC Biology paper that shows that TBP2 is highly similar to TATA binding proteins but is an oocyte-specific factor and is indispensable for female germ cell development in vertebrates.
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74.
145 Accesses
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Suppression of adaptive immunity to heterologous antigens during Plasmodium infection through hemozoin-induced failure of dendritic cell function
Owain R Millington, Caterina Di Lorenzo, R Phillips, Paul Garside, James M Brewer Journal of Biology 2006, 5:5 (12 April 2006)
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Editor’s summary
Hemozoin pigment, released during malarial infection, is now known to cause dendritic cell failure and subsequent host immunosupression, explaining why people with malaria become prone to infection and respond poorly to vaccines.
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75.
144 Accesses
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The 'stem cell' concept: is it holding us back?
Arthur D Lander Journal of Biology 2009, 8:70 (21 September 2009)
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Editor’s summary
Arthur Lander argues that the molecular definition of a stem cell is a mirage and 'stemness' is an emergent property of cells in their physiological context, so that the current concept is arguably an obstacle to research.
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76.
139 Accesses
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Limb regeneration revisited
Jessica L Whited, Clifford J Tabin Journal of Biology 2009, 8:5 (13 January 2009)
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77.
137 Accesses
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Dishevelled and Wnt signaling: is the nucleus the final frontier?
Raymond Habas, Igor B Dawid Journal of Biology 2005, 4:2 (17 February 2005)
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78.
135 Accesses
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Combined optical trapping and single-molecule fluorescence
Matthew J Lang, Polly M Fordyce, Steven M Block Journal of Biology 2003, 2:6 (24 February 2003)
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| F1000 Biology
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79.
135 Accesses
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The phosphatidylserine receptor has essential functions during embryogenesis but not in apoptotic cell removal
Jens Böse, Achim D Gruber, Laura Helming, Stefanie Schiebe, Ivonne Wegener, Martin Hafner, Marianne Beales, Frank Köntgen, Andreas Lengeling Journal of Biology 2004, 3:15 (23 August 2004)
Abstract | Full text | PDF
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| F1000 Biology
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Editor’s summary
The phosphatidylserine receptor is not needed for the recognition of dying cells as previously thought, and instead plays a role in the differentiation of a wide range of tissues during embryogenesis.
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80.
134 Accesses
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Electrical protein detection in cell lysates using high-density peptide-aptamer microarrays
David Evans, Steven Johnson, Sophie Laurenson, A Giles Davies, Paul Ko Ferrigno, Christoph Wälti Journal of Biology 2008, 7:3 (31 January 2008)
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Editor’s summary
Specific detection of protein isoforms in whole cell lysates is now more efficient with the arrival of a label-free electronic sensing system consisting of immobilized peptide aptamers on individual gold electrodes at the micron scale.
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81.
134 Accesses
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RNA interference in nematodes and the chance that favored Sydney Brenner
Marie-Anne Félix Journal of Biology 2008, 7:34 (13 November 2008)
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82.
133 Accesses
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Ockham's broom: A new series
Miranda Robertson Journal of Biology 2009, 8:79 (16 October 2009)
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83.
131 Accesses
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Evidence for large domains of similarly expressed genes in the Drosophila genome
Paul T Spellman, Gerald M Rubin Journal of Biology 2002, 1:5 (18 June 2002)
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84.
131 Accesses
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Q&A: What are pharmacological chaperones and why are they interesting?
Dagmar Ringe, Gregory A Petsko Journal of Biology 2009, 8:80 (13 October 2009)
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Editor’s summary
Small molecules that stabilize mutant proteins with high specificity can be used to treat protein misfolding and metabolic diseases: in a Q&A highlighting recent successes, Dagmar Ringe and Gregory Petsko explain how.
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85.
130 Accesses
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Environmental stress and the effects of mutation
Santiago F Elena, J Arjan GM de Visser Journal of Biology 2003, 2:12 (26 June 2003)
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86.
129 Accesses
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How chemotherapy damages the central nervous system
Christina A Meyers Journal of Biology 2008, 7:11 (22 April 2008)
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87.
128 Accesses
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The nature of cell-cycle checkpoints: facts and fallacies
Alexey Khodjakov, Conly L Rieder Journal of Biology 2009, 8:88 (16 November 2009)
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| F1000 Biology
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Editor’s summary
The development of the checkpoint concept was a landmark in the understanding of cell cycle control, but Alexey Khodjakov and Conly Rieder argue that it is widely misunderstood, to the detriment of progress in cell cycle research.
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88.
127 Accesses
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The gene complement of the ancestral bilaterian - was Urbilateria a monster?
David J Miller, Eldon E Ball Journal of Biology 2009, 8:89 (19 November 2009)
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Editor’s summary
Bilateral animals have selectively shed genes as they evolved from their hypothetical ancestor, Urbilateria. Miller and Ball review this genomic history and ask if a recent paper in BMC Evolutionary Biology points to an ancestral worm.
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89.
125 Accesses
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A quantitative analysis of the mechanism that controls body size in Manduca sexta
HF Nijhout, G Davidowitz, DA Roff Journal of Biology 2006, 5:16 (2 August 2006)
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Editor’s summary
Final body size in the moth Manduca sexta can be predicted from the juvenile caterpillar by modeling three key growth measurements to reveal how growth rate, nutrition and temperature determine eventual body size.
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90.
124 Accesses
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Nuclear localization is required for Dishevelled function in Wnt/β-catenin signaling
Keiji Itoh, Barbara K Brott, Gyu-Un Bae, Marianne J Ratcliffe, Sergei Y Sokol Journal of Biology 2005, 4:3 (15 February 2005)
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| F1000 Biology
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Editor’s summary
Dishevelled, a key player in the Wnt/beta-catenin signalling pathway, doesn't only function in the cytoplasm and at the cell membrane, but must be imported into the nucleus to perform at least one key aspect of its function.
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91.
124 Accesses
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Cryptic biodiversity in a changing world
Luciano B Beheregaray, Adalgisa Caccone Journal of Biology 2007, 6:9 (21 December 2007)
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92.
123 Accesses
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Endophilins interact with Moloney murine leukemia virus Gag and modulate virion production
Margaret Q Wang, Wankee Kim, Guangxia Gao, Ted A Torrey, Herbert C Morse, Pietro De Camilli, Stephen P Goff Journal of Biology 2003, 3:4 (4 December 2003)
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93.
122 Accesses
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Vernalization in cereals
Elizabeth S Dennis, W James Peacock Journal of Biology 2009, 8:57 (22 June 2009)
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Editor’s summary
Elizabeth Dennis and James Peacock review recent advances in the molecular basis of the vernalization response that, with the increase in day length at the end of the winter season, triggers flowering.
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94.
122 Accesses
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Reprogramming of the non-coding transcriptome during brain development
Saba Valadkhan, Timothy W Nilsen Journal of Biology 2010, 9:5 (5 February 2010)
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Editor’s summary
Valadkhan and Nilsen discuss the mystery of long noncoding RNAs and a recent global expression study in BMC Neuroscience that provides a platform for answering fundamental questions about their role in the development of the brain.
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95.
120 Accesses
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Forward genetics in Tribolium castaneum: opening new avenues of research in arthropod biology
Andrew D Peel Journal of Biology 2009, 8:106 (30 December 2009)
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Editor’s summary
Peel discusses the merits of the flour beetle over the fruit fly as a new arthropod model organism and describes how a new mutagenesis screen published in BMC Biology increases the usefulness of this creature.
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96.
121 Accesses
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Aquaglyceroporins: ancient channels for metalloids
Hiranmoy Bhattacharjee, Rita Mukhopadhyay, Saravanamuthu Thiyagarajan, Barry P Rosen Journal of Biology 2008, 7:33 (7 November 2008)
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97.
118 Accesses
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At the crossroads: AMP-activated kinase and the LKB1 tumor suppressor link cell proliferation to metabolic regulation
John M Kyriakis Journal of Biology 2003, 2:26 (22 October 2003)
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98.
119 Accesses
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Q&A: Cooperativity
James E Ferrell Journal of Biology 2009, 8:53 (16 June 2009)
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Editor’s summary
James Ferrell explains in Q&A format how cooperativity can tune the behaviour of biological macromolecules to their physiological functions, and can be achieved in many different ways.
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99.
119 Accesses
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Colugos: obscure mammals glide into the evolutionary limelight
Robert D Martin Journal of Biology 2008, 7:13 (1 May 2008)
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100.
117 Accesses
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Sometimes one just isn't enough: do vertebrates contain an H2A.Z hyper-variant?
Monika Mehta, Hyun-Soo Kim, Michael-Christopher Keogh Journal of Biology 2010, 9:3 (21 January 2010)
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Editor’s summary
Nucleosomes present a variable platform for recruitment of transcriptional and repair machineries because of variant histones and post-translational modifications. Keogh and colleagues discuss reports in BMC Biology and BMC Evolutionary Biology that suggest further complexity, in conserved variants of the variants.
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