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1.

8331
Accesses

Comment   Free Highly Accessed

Are we training pit bulls to review our manuscripts?

Virginia Walbot Journal of Biology 2009, 8:24 (9 March 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 4 comments |  Editor’s summary

Virginia Walbot accepts some of the blame for remorselessly negative reviewers, and suggests a training program for graduate students and post docs that will deliver a fairer assessment of manuscripts.

2.

6742
Accesses

Minireview   Free Highly Accessed

Music, memory and emotion

Lutz Jäncke Journal of Biology 2008, 7:21 (8 August 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

3.

6046
Accesses

Comment   Free Highly Accessed

Open access to the scientific journal literature

Peter Suber Journal of Biology 2002, 1:3 (18 June 2002)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

4.

5446
Accesses

Editorial   Open Access Highly Accessed

What are journals for?

Miranda Robertson Journal of Biology 2009, 8:1 (27 January 2009)

Full text | PDF |  Editor’s summary

Journal of Biology launches a re-review opt-out experiment in response to widespread dissatisfaction with peer review, and publishes the first of two new regular features - a full review on the ribosome and a question-and-answer feature on systems biology.

5.

4886
Accesses

Opinion   Free Highly Accessed

Top dogs: wolf domestication and wealth

Carlos A Driscoll, David W Macdonald Journal of Biology 2010, 9:10 (24 February 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Commenting on a phylogeographic analysis in BMC Biology that supports a Middle Eastern origin of small dogs, Driscoll and Macdonald speculate on the implications of wolf domestication and size reduction occurring at a time of transition between hunter-gatherer and sedentary societies.

6.

4783
Accesses

Research article   Open Access Highly Accessed

Growth control of the eukaryote cell: a systems biology study in yeast

Juan I Castrillo, Leo A Zeef, David C Hoyle, Nianshu Zhang, Andrew Hayes, David CJ Gardner, Michael J Cornell, June Petty, Luke Hakes, Leanne Wardleworth, Bharat Rash, Marie Brown, Warwick B Dunn, David Broadhurst, Kerry O'Donoghue, Svenja S Hester, Tom PJ Dunkley, Sarah R Hart, Neil Swainston, Peter Li, Simon J Gaskell, Norman W Paton, Kathryn S Lilley, Douglas B Kell, Stephen G Oliver Journal of Biology 2007, 6:4 (30 April 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

The first comprehensive systems biology study on growth rate control in yeast integrates information from the transcriptome, proteome and metabolome to reveal how cell growth underlies key cellular and development processes.

7.

4703
Accesses

Research article   Open Access Highly Accessed

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae

Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers Journal of Biology 2006, 5:11 (8 June 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A new literature-based yeast database documents over 33,000 biological interactions, manually curated from the primary literature, and provides an invaluable resource to benchmark high-throughput methods in the study of complex networks.

8.

4054
Accesses

Research article   Open Access Highly Accessed

Conservation of core gene expression in vertebrate tissues

Esther T Chan, Gerald T Quon, Gordon Chua, Tomas Babak, Miles Trochesset, Ralph A Zirngibl, Jane Aubin, Michael JH Ratcliffe, Andrew Wilde, Michael Brudno, Quaid D Morris, Timothy R Hughes Journal of Biology 2009, 8:33 (16 April 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

High conservation of tissue-specific expression is found across vertebrates yet there is a lack of conservation in common regulatory sequences/signatures.

9.

4021
Accesses

Research article   Open Access Highly Accessed

Systemic 5-fluorouracil treatment causes a syndrome of delayed myelin destruction in the central nervous system

Ruolan Han, Yin M Yang, Joerg Dietrich, Anne Luebke, Margot Mayer-Pröschel, Mark Noble Journal of Biology 2008, 7:12 (22 April 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment |  Editor’s summary

The chemotherapy drug, 5-fluorouracil, causes delayed degeneration in the central nervous system of animals, a newly identified type of damage that helps explain the cognitive defects or `chemobrain` symptoms associated with cancer treatment.

10.

3912
Accesses

Minireview   Free Highly Accessed

The mathematics of sexual attraction

José A Feijó Journal of Biology 2010, 9:18 (29 March 2010)

Abstract | Full text | PDF | PubMed

11.

3743
Accesses

Research article   Open Access Highly Accessed

Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress

Markus Ralser, Mirjam M Wamelink, Axel Kowald, Birgit Gerisch, Gino Heeren, Eduard A Struys, Edda Klipp, Cornelis Jakobs, Michael Breitenbach, Hans Lehrach, Sylvia Krobitsch Journal of Biology 2007, 6:10 (21 December 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

Yeast and C. elegans share a conserved cellular mechanism that counteracts the fatal consequences of oxidative stress by enabling the redirection of metabolic flux from glycolysis to the pentose phosphate pathway.

12.

3585
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Research article   Open Access Highly Accessed

The Drosophila Forkhead transcription factor FOXO mediates the reduction in cell number associated with reduced insulin signaling

Martin A Jünger, Felix Rintelen, Hugo Stocker, Jonathan D Wasserman, Mátyás Végh, Thomas Radimerski, Michael E Greenberg, Ernst Hafen Journal of Biology 2003, 2:20 (7 August 2003)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology

13.

3441
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Minireview   Free Highly Accessed

Endothelial adherens junctions and the actin cytoskeleton: an 'infinity net'?

Maria Grazia Lampugnani Journal of Biology 2010, 9:16 (8 April 2010)

Abstract | Full text | PDF | PubMed

14.

3172
Accesses

Research article   Open Access Highly Accessed

Complexes between the LKB1 tumor suppressor, STRADα/β and MO25α/β are upstream kinases in the AMP-activated protein kinase cascade

Simon A Hawley, Jérôme Boudeau, Jennifer L Reid, Kirsty J Mustard, Lina Udd, Tomi P Mäkelä, Dario R Alessi, D Grahame Hardie Journal of Biology 2003, 2:28 (24 September 2003)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology

15.

3079
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Research article   Open Access Highly Accessed

High-resolution quantitative imaging of mammalian and bacterial cells using stable isotope mass spectrometry

Claude Lechene, Francois Hillion, Greg McMahon, Douglas Benson, Alan M Kleinfeld, J Patrick Kampf, Daniel Distel, Yvette Luyten, Joseph Bonventre, Dirk Hentschel, Kwon Park, Susumu Ito, Martin Schwartz, Gilles Benichou, Georges Slodzian Journal of Biology 2006, 5:20 (5 October 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

For the first time it is possible to image and quantify at nanometer resolution biological samples labeled with stable isotopes, using multi-isotope imaging mass spectrometry, applicable to all fields of biomedical research.

16.

3059
Accesses

Minireview   Free Highly Accessed

The origin and evolution of lactation

Anthony V Capuco, R Michael Akers Journal of Biology 2009, 8:37 (24 April 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Capuco and Akers review the biology of lactation and discuss a new report in Genome Biology that compares the bovine genome with six other mammalian genomes to study how lactation and its regulation evolved.

17.

2969
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Research article   Open Access Highly Accessed

Generalized immune activation as a direct result of activated CD4+ T cell killing

Rute Marques, Adam Williams, Urszula Eksmond, Andy Wullaert, Nigel Killeen, Manolis Pasparakis, Dimitris Kioussis, George Kassiotis Journal of Biology 2009, 8:93 (27 November 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

HIV causes immunodeficiency by deleting activated CD4 T lymphocytes, but paradoxically also causes general immune activation. Kassiotis and colleagues have mimicked this effect by using genetic engineering to delete activated T cells in mice, and show that in the mice it is due to loss of regulatory T cells.

18.

2870
Accesses

Minireview   Free

The water flea Daphnia - a 'new' model system for ecology and evolution?

Angelika Stollewerk Journal of Biology 2010, 9:21 (13 January 2010)

Abstract | Full text | PDF | PubMed

19.

2862
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Minireview   Free Highly Accessed

Parasite immunomodulation and polymorphisms of the immune system

Rick M Maizels Journal of Biology 2009, 8:62 (5 August 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Rick Maizels discusses a recent paper in BMC Biology on wild mammals that lend support to the hygiene hypothesis, and explains why genetic variants that reduce parasite-induced immunosuppression are associated with an increase in allergic reactions.

20.

2809
Accesses

Research article   Open Access Highly Accessed

CNS progenitor cells and oligodendrocytes are targets of chemotherapeutic agents in vitro and in vivo

Joerg Dietrich, Ruolan Han, Yin Yang, Margot Mayer-Pröschel, Mark Noble Journal of Biology 2006, 5:22 (30 November 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment |  Editor’s summary

Chemotherapeutic agents are more toxic to cells of the central nervous system than to cancer cells when administered to mice and cultured cells, providing an explanation for adverse neurological effects of systemic chemotherapy.

21.

2803
Accesses

Question & Answer   Free Highly Accessed

Q&A: Epistasis

Frederick P Roth, Howard D Lipshitz, Brenda J Andrews Journal of Biology 2009, 8:35 (22 May 2009)

Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The term epistasis has at least three meanings in biology. Brenda Andrews and colleagues explain in Q&A format how in its classical sense, epistasis allows biological pathways to be defined.

22.

2736
Accesses

Review   Free Highly Accessed

Apes, lice and prehistory

Robin A Weiss Journal of Biology 2009, 8:20 (10 February 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 2 comments |  Editor’s summary

In a special issue to celebrate the bicentennial of Darwin's birth, Robin Weiss reviews recent speculations on human prehistory based on louse phylogeny, and adds his own on the origins of pubic hair.

23.

2733
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Minireview   Free

Acoel and platyhelminth models for stem-cell research

Alexandra E Bely, James M Sikes Journal of Biology 2010, 9:14 (16 February 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The bodies of platyhelminth and acoel worms are continually renewed from large pools of somatic stem cells. Bely and Sikes discuss their consequent attractiveness for stem cell research, and how recent studies, including one in BMC Developmental Biology, reveal aspects of the cellular dynamics and molecular basis of stem-cell function in these animals.

24.

2717
Accesses

Research article   Open Access

Madm (Mlf1 adapter molecule) cooperates with Bunched A to promote growth in Drosophila

Silvia Gluderer, Erich Brunner, Markus Germann, Virginija Jovaisaite, Changqing Li, Cyrill A Rentsch, Ernst Hafen, Hugo Stocker Journal of Biology 2010, 9:9 (11 February 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Stocker and colleagues identify and analyze a growth-promoting complex in Drosophila, formed between the putative transcription factor BunA, for which human homologs can functionally substitute, and the adaptor protein Madm.

25.

2644
Accesses

Minireview   Free Highly Accessed

The bacterial pathogen Listeria monocytogenes: an emerging model in prokaryotic transcriptomics

Pascale Cossart, Cristel Archambaud Journal of Biology 2009, 8:107 (30 December 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Cossart and Archambaud discuss the implications of the outcome of deep RNA sequencing used to probe the virulence toolkit of Listeria monocytogenes, reported in a recent paper in BMC Genomics.

26.

2634
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Minireview   Free

Evolution underground: shedding light on the diversification of subterranean insects

Carlos Juan, Brent C Emerson Journal of Biology 2010, 9:17 (11 March 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Juan and Emerson discuss the reconstruction of the molecular phylogeny of a large Mediterranean cave-dwelling beetle clade recently presented in BMC Evolutionary Biology, and the implications for the evolutionary origin of the beetle ancestor.

27.

2592
Accesses

Minireview   Free Highly Accessed

Genome of a songbird unveiled

Raphael Pinaud Journal of Biology 2010, 9:19 (1 April 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Pinaud heralds the publication of the zebra finch genome, reviewing some of the most exciting findings of this pioneering effort and explaining how this songbird model offers unique insights into auditory learning, singing behaviour and other biological phenomena.

28.

2573
Accesses

Minireview   Free

Oxidative stress, thermogenesis and evolution of uncoupling proteins

Eduardo Rial, Rafael Zardoya Journal of Biology 2009, 8:58 (16 June 2009)

Abstract | Full text | PDF | PubMed

29.

2566
Accesses

Research article   Open Access Highly Accessed

The functional landscape of mouse gene expression

Wen Zhang, Quaid D Morris, Richard Chang, Ofer Shai, Malina A Bakowski, Nicholas Mitsakakis, Naveed Mohammad, Mark D Robinson, Ralph Zirngibl, Eszter Somogyi, Nancy Laurin, Eftekhar Eftekharpour, Eric Sat, Jörg Grigull, Qun Pan, Wen-Tao Peng, Nevan Krogan, Jack Greenblatt, Michael Fehlings, Derek van der Kooy, Jane Aubin, Benoit G Bruneau, Janet Rossant, Benjamin J Blencowe, Brendan J Frey, Timothy R Hughes Journal of Biology 2004, 3:21 (6 December 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

Gene function in mammals can be quickly and reliably predicted using a quantitative analysis of tissue-specific patterns of RNA expression.

30.

2561
Accesses

Opinion   Free Highly Accessed

The nature of cell-cycle checkpoints: facts and fallacies

Alexey Khodjakov, Conly L Rieder Journal of Biology 2009, 8:88 (16 November 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

The development of the checkpoint concept was a landmark in the understanding of cell cycle control, but Alexey Khodjakov and Conly Rieder argue that it is widely misunderstood, to the detriment of progress in cell cycle research.

31.

2558
Accesses

Research article   Open Access Highly Accessed

Small-molecule modulators of Hedgehog signaling: identification and characterization of Smoothened agonists and antagonists

Maria Frank-Kamenetsky, Xiaoyan M Zhang, Steve Bottega, Oivin Guicherit, Hynek Wichterle, Henryk Dudek, David Bumcrot, Frank Y Wang, Simon Jones, Janine Shulok, Lee L Rubin, Jeffery A Porter Journal of Biology 2002, 1:10 (6 November 2002)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

Characterization of small-molecule agonists and antagonists of the Hedgehog signaling pathway reveals that these candidate therapeutics act at the level of the pathway activator Smoothened, which may normally be regulated by an endogenous small molecule.

32.

2549
Accesses

Research article   Open Access Highly Accessed

The hydrodynamics of dolphin drafting

Daniel Weihs Journal of Biology 2004, 3:8 (4 May 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Models of the hydrodynamic forces between two swimming dolphins show that baby dolphins keep up with their more powerful mothers by getting an almost energetically "free ride" in their slipstream.

33.

2548
Accesses

Research article   Open Access Highly Accessed

Compound developmental eye disorders following inactivation of TGFβ signaling in neural-crest stem cells

Lars M Ittner, Heiko Wurdak, Kerstin Schwerdtfeger, Thomas Kunz, Fabian Ille, Per Leveen, Tord A Hjalt, Ueli Suter, Stefan Karlsson, Farhad Hafezi, Walter Born, Lukas Sommer Journal of Biology 2005, 4:11 (14 December 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Important structures in developing mouse eyes originate from neural crest cells controlled by TGFbeta signals from the lens, providing insight into human conditions that results in glaucoma and blindness.

34.

2506
Accesses

Research article   Open Access

Bridge helix and trigger loop perturbations generate superactive RNA polymerases

Lin Tan, Simone Wiesler, Dominika Trzaska, Hannah C Carney, Robert OJ Weinzierl Journal of Biology 2008, 7:40 (2 December 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Mutations targeted to key functional areas of RNA polymerases can generate superactive enzymes that suggest how conformational changes in specialized domains of the enzyme contribute to the catalytic cycle.

35.

2480
Accesses

Research article   Open Access Highly Accessed

ERK1 and ERK2 mitogen-activated protein kinases affect Ras-dependent cell signaling differentially

Chiara Vantaggiato, Ivan Formentini, Attilio Bondanza, Chiara Bonini, Luigi Naldini, Riccardo Brambilla Journal of Biology 2006, 5:14 (28 June 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The mitogen-activated protein kinases ERK1 and ERK2 have unexpectedly independent roles in normal and malignant Ras-dependent cell proliferation; ERK2 controls normal cell proliferation whereas ERK1 antagonizes ERK2 activity.

36.

2447
Accesses

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Adaptations of proteins to cellular and subcellular pH

Bertrand Garcia-Moreno Journal of Biology 2009, 8:98 (2 December 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Protein function and stability are acutely sensitive to pH, which varies in different subcellular compartments. Garcia-Moreno discusses research recently reported in BMC Biology suggesting that adaptation to different compartments is reflected in charge distribution.

37.

2421
Accesses

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Robust and specific inhibition of microRNAs in Caenorhabditis elegans

Samrat T Kundu, Frank J Slack Journal of Biology 2010, 9:20 (1 April 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Frank Slack and Samrat Kundu highlight a refinement of the antisense strategy used to inhibit miRNAs in C.elegans, published in Silence, with an adaptation that supports transmission through the germline, and combinatorial use to target several different miRNAs in developing tissues.

38.

2418
Accesses

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Timing the first human migration into eastern Asia

Roscoe Stanyon, Marco Sazzini, Donata Luiselli Journal of Biology 2009, 8:18 (6 February 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 2 comments

39.

2394
Accesses

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Life and death as a T lymphocyte: from immune protection to HIV pathogenesis

Nienke Vrisekoop, Judith N Mandl, Ronald N Germain Journal of Biology 2009, 8:91 (27 November 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Vrisekekoop, Mandl and Germain discuss the consequences of deleting activated CD4 T cells both in HIV infected humans and in engineered mice described in a paper published in Journal of Biology, and how both the similarities and the differences may be instructive.

40.

2384
Accesses

Minireview   Free

Scale-eating cichlids: from hand(ed) to mouth

A Richard Palmer Journal of Biology 2010, 9:11 (24 February 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Palmer discusses recent studies, including one in BMC Biology, suggesting that mouth bending in scale-eating cichlids cannot be explained by frequency dependent selection alone, but that the behavior of the fish may amplify mouth asymmetry during growth.

41.

2369
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Research article   Open Access Highly Accessed

A functional genomic analysis of cell morphology using RNA interference

AA Kiger, B Baum, S Jones, MR Jones, A Coulson, C Echeverri, N Perrimon Journal of Biology 2003, 2:27 (1 October 2003)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology

42.

2363
Accesses

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Targeting TNF-α for cancer therapy

Elizabeth R Burton, Steven K Libutti Journal of Biology 2009, 8:85 (23 October 2009)

Abstract | Full text | PDF | PubMed

43.

2348
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Research article   Open Access Highly Accessed

Search for a 'Tree of Life' in the thicket of the phylogenetic forest

Pere Puigbò, Yuri I Wolf, Eugene V Koonin Journal of Biology 2009, 8:59 (13 July 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Koonin and colleagues, comparing a forest of 7000 phylogenetic trees, discern vertical inheritance even at the earliest stages of prokaryotic evolution, despite horizontal gene transfer, but the branching order of the earliest radiations may never be resolved.

44.

2341
Accesses

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The gene complement of the ancestral bilaterian - was Urbilateria a monster?

David J Miller, Eldon E Ball Journal of Biology 2009, 8:89 (19 November 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Bilateral animals have selectively shed genes as they evolved from their hypothetical ancestor, Urbilateria. Miller and Ball review this genomic history and ask if a recent paper in BMC Evolutionary Biology points to an ancestral worm.

45.

2334
Accesses

Minireview   Free

Making progress in genetic kin recognition among vertebrates

Jane L Hurst, Robert J Beynon Journal of Biology 2010, 9:13 (17 February 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Highlighting recent research in BMC Evolutionary Biology that analyzes the scent profiles of ring-tailed lemurs in relation to their genetic distance, Hurst and Benyon discuss recent progress and remaining challenges in deciphering how vertebrates recognise kin by their smell.

46.

2324
Accesses

Opinion   Free Highly Accessed

Why didn't Darwin discover Mendel's laws?

Jonathan C Howard Journal of Biology 2009, 8:15 (24 February 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

In an opinion piece, Jonathan Howard suggests that Darwin failed to discover the laws of inheritance (Mendel’s laws) due to his focus on small quantitative variations as the raw material of evolution.

47.

2247
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No better time to FRET: shedding light on host pathogen interactions

Richard D Hayward, Jon D Goguen, John M Leong Journal of Biology 2010, 9:12 (18 February 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Hayward and colleagues discuss the promise of fluorescence resonance energy transfer (FRET)-based techniques to study the spatio-temporal subversion of host cell signaling by pathogens, reviewing the few existing examples of this, which include a recent paper in BMC Biology, to illustrate the power of an approach that has been surprisingly under-exploited to date.

48.

2247
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Research article   Open Access Highly Accessed

Dosage compensation is less effective in birds than in mammals

Yuichiro Itoh, Esther Melamed, Xia Yang, Kathy Kampf, Susanna Wang, Nadir Yehya, Atila Van Nas, Kirstin Replogle, Mark R Band, David F Clayton, Eric E Schadt, Aldons J Lusis, Arthur P Arnold Journal of Biology 2007, 6:2 (22 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment |  Editor’s summary

Male:female ratios of gene expression in zebra finch and chicken reveal that birds, unlike mammals, have surprisingly ineffective sex-chromosome dosage compensation mechanisms resulting in an imbalance between autosomal and sex-linked genes.

49.

2199
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Regulation of metabolism in Caenorhabditis elegans longevity

Marco Gallo, Donald L Riddle Journal of Biology 2010, 9:7 (10 February 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

A metabolomic quest for universals in the control of lifespan recently reported in BMC Biology implicates branched-chain amino acid pools. Gallo and Riddle review the lessons from C.elegans in research on longevity, and discuss the implications of the metabolomic research.

50.

2165
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Research article   Open Access Highly Accessed

Astrocytes derived from glial-restricted precursors promote spinal cord repair

Jeannette E Davies, Carol Huang, Christoph Proschel, Mark Noble, Margot Mayer-Proschel, Stephen JA Davies Journal of Biology 2006, 5:7 (27 April 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Significantly better spinal cord repair in rats results from transplanting specific pre-differentiated cells, cultured to become immature neural-support cells, than from transplanting undifferentiated embryonic stem cells.

51.

2160
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SnoPatrol: how many snoRNA genes are there?

Paul P Gardner, Alex Bateman, Anthony M Poole Journal of Biology 2010, 9:4 (25 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Gardner, Bateman and Poole review the current knowledge of small nucleolar RNAs (snoRNAs) and discuss two BMC Genomic papers reporting the identification of novel snoRNAs and the likelihood that there are many more out there.

52.

2151
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How chemotherapy damages the central nervous system

Christina A Meyers Journal of Biology 2008, 7:11 (22 April 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment

53.

2039
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A circuit supporting concentration-invariant odor perception in Drosophila

Kenta Asahina, Matthieu Louis, Silvia Piccinotti, Leslie B Vosshall Journal of Biology 2009, 8:9 (26 January 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

In Drosophila, inhibitory interneurons are progressively recruited as olfactory sensory neurons are activated at increasing odor concentrations, allowing the flies to identify distinct odors at different intensities.

54.

2036
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The cattle genome reveals its secrets

David W Burt Journal of Biology 2009, 8:36 (24 April 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Burt discusses the impact of the recently sequenced Bovine genome on our understanding of bovine phylogeny and the genomics of domestication.

55.

2029
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Small changes, big results: evolution of morphological discontinuity in mammals

Rodney L Honeycutt Journal of Biology 2008, 7:9 (18 March 2008)

Abstract | Full text | PDF | PubMed

56.

2024
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A global analysis of genetic interactions in Caenorhabditis elegans

Alexandra B Byrne, Matthew T Weirauch, Victoria Wong, Martina Koeva, Scott J Dixon, Joshua M Stuart, Peter J Roy Journal of Biology 2007, 6:8 (26 September 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A C. elegans genetic-interaction network built by combining gene mutants and knockdowns is the largest animal network to date, revealing redundancy among functional modules and surprisingly little conservation of network connections compared to yeast.

57.

2024
Accesses

Opinion   Free Highly Accessed

Promoter architecture and the evolvability of gene expression

Itay Tirosh, Naama Barkai, Kevin J Verstrepen Journal of Biology 2009, 8:95 (14 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Major evolutionary change depends on changes in gene expression. Itay Tirosh and colleagues review recent research on the influence of promoter architecture and mutations in regulatory proteins on divergent expression patterns and suggest what is required for evolvability.

58.

2013
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Islands in the sky: the impact of Pleistocene climate cycles on biodiversity

Allan J Baker Journal of Biology 2008, 7:32 (3 November 2008)

Abstract | Full text | PDF | PubMed

59.

2010
Accesses

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Metabolic reconfiguration is a regulated response to oxidative stress

Chris M Grant Journal of Biology 2008, 7:1 (25 January 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

60.

2009
Accesses

Opinion   Free Highly Accessed

The 'stem cell' concept: is it holding us back?

Arthur D Lander Journal of Biology 2009, 8:70 (21 September 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 2 comments |  Editor’s summary

Arthur Lander argues that the molecular definition of a stem cell is a mirage and 'stemness' is an emergent property of cells in their physiological context, so that the current concept is arguably an obstacle to research.

61.

2002
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The short coiled-coil domain-containing protein UNC-69 cooperates with UNC-76 to regulate axonal outgrowth and normal presynaptic organization in Caenorhabditis elegans

Cheng-Wen Su, Suzanne Tharin, Yishi Jin, Bruce Wightman, Mona Spector, David Meili, Nancy Tsung, Christa Rhiner, Dimitris Bourikas, Esther Stoeckli, Gian Garriga, H Robert Horvitz, Michael O Hengartner Journal of Biology 2006, 5:9 (25 May 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Newly characterized in C. elegans, the protein UNC-69 interacts with kinesin–binding protein UNC-76 in a complex associated with trafficking vesicles along axons - a process that drives axon growth and helps synapse formation.

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Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network

Lan V Zhang, Oliver D King, Sharyl L Wong, Debra S Goldberg, Amy HY Tong, Guillaume Lesage, Brenda Andrews, Howard Bussey, Charles Boone, Frederick P Roth Journal of Biology 2005, 4:6 (1 June 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

The multiple complex biological interactions in a yeast cell can be mapped in a simple graphical form, enhancing our understanding of the networks of interaction by which components of a cell influence one another.

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Evidence for large domains of similarly expressed genes in the Drosophila genome

Paul T Spellman, Gerald M Rubin Journal of Biology 2002, 1:5 (18 June 2002)

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Imp-L2, a putative homolog of vertebrate IGF-binding protein 7, counteracts insulin signaling in Drosophila and is essential for starvation resistance

Basil Honegger, Milos Galic, Katja Köhler, Franz Wittwer, Walter Brogiolo, Ernst Hafen, Hugo Stocker Journal of Biology 2008, 7:10 (15 April 2008)

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The first functional insulin-binding protein identified in invertebrates, Imp-L2, controls Drosophila body size by regulating insulin-mediated growth and is essential for larval survival and dampening insulin signaling under starvation conditions.

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Q&A: What are pharmacological chaperones and why are they interesting?

Dagmar Ringe, Gregory A Petsko Journal of Biology 2009, 8:80 (13 October 2009)

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Small molecules that stabilize mutant proteins with high specificity can be used to treat protein misfolding and metabolic diseases: in a Q&A highlighting recent successes, Dagmar Ringe and Gregory Petsko explain how.

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Differences in the way a mammalian cell and yeast cells coordinate cell growth and cell-cycle progression

Ian Conlon, Martin Raff Journal of Biology 2003, 2:7 (24 April 2003)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 4 comments | F1000 Biology

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Regeneration review reprise

Jessica L Whited, Clifford J Tabin Journal of Biology 2010, 9:15 (16 February 2010)

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Stem cell biology and new high throughput techniques are inspiring new advances in research on regeneration. Whited and Tabin discuss recent developments, including two recent reports in BMC Biology that may mean a reevaluation of the regenerative prospects for humans.

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The genetics of gender and life span

John Tower, Michelle Arbeitman Journal of Biology 2009, 8:38 (29 April 2009)

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Tower and Arbeitman discuss two studies in BMC Evolutionary Biology showing that the genetic differences between male and female seed beetles and in fruit flies have a significant effect upon aging and life span.

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Notch signaling, the segmentation clock, and the patterning of vertebrate somites

Julian Lewis, Anja Hanisch, Maxine Holder Journal of Biology 2009, 8:44 (22 May 2009)

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Julian Lewis and colleagues review the part played by the Notch signaling pathway in the emergence of somites from the embryonic mesoderm and their later differentiation.

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Global analysis of X-chromosome dosage compensation

Vaijayanti Gupta, Michael Parisi, David Sturgill, Rachel Nuttall, Michael Doctolero, Olga K Dudko, James D Malley, P Scott Eastman, Brian Oliver Journal of Biology 2006, 5:3 (16 February 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

In Drosophila germ cells, X chromosome genes are upregulated to balance their expression with that of autosomes; the same happens in somatic cells of mice and nematodes.

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Transplanted astrocytes derived from BMP- or CNTF-treated glial-restricted precursors have opposite effects on recovery and allodynia after spinal cord injury

Jeannette E Davies, Christoph Pröschel, Ningzhe Zhang, Mark Noble, Margot Mayer-Pröschel, Stephen JA Davies Journal of Biology 2008, 7:24 (19 September 2008)

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Glial cells can promote the repair of damaged spinal cord, but experiments in rats show that while some promote functional recovery others cause abnormal growth and pain, depending on the growth factor used to cultivate them in culture.

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Environmental stresses can alleviate the average deleterious effect of mutations

Roy Kishony, Stanislas Leibler Journal of Biology 2003, 2:14 (29 May 2003)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment | F1000 Biology

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Apical polarity in three-dimensional culture systems: where to now?

Jamie L Inman, Mina J Bissell Journal of Biology 2010, 9:2 (21 January 2010)

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Infectious causes of cancer and their detection

Lucy Dalton-Griffin, Paul Kellam Journal of Biology 2009, 8:67 (11 August 2009)

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Lucy Dalton-Griffin and Paul Kellam discuss the role of viruses in cancer following a recent paper in BMC Medical Genomics describing a new method of detecting viral DNA in cancer cells.

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Q&A: Cooperativity

James E Ferrell Journal of Biology 2009, 8:53 (16 June 2009)

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James Ferrell explains in Q&A format how cooperativity can tune the behaviour of biological macromolecules to their physiological functions, and can be achieved in many different ways.

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RNA interference in nematodes and the chance that favored Sydney Brenner

Marie-Anne Félix Journal of Biology 2008, 7:34 (13 November 2008)

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The transcriptome of human monocyte subsets begins to emerge

Fernando O Martinez Journal of Biology 2009, 8:99 (23 December 2009)

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Monocytes are circulating cells that can differentiate into macrophages with either repair and maintenance or inflammatory properties. Martinez discusses recent papers, including one published in BMC Genomics, that help define these distinct properties and thus identify therapeutic targets.

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Forward genetics in Tribolium castaneum: opening new avenues of research in arthropod biology

Andrew D Peel Journal of Biology 2009, 8:106 (30 December 2009)

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Peel discusses the merits of the flour beetle over the fruit fly as a new arthropod model organism and describes how a new mutagenesis screen published in BMC Biology increases the usefulness of this creature.

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The phosphatidylserine receptor has essential functions during embryogenesis but not in apoptotic cell removal

Jens Böse, Achim D Gruber, Laura Helming, Stefanie Schiebe, Ivonne Wegener, Martin Hafner, Marianne Beales, Frank Köntgen, Andreas Lengeling Journal of Biology 2004, 3:15 (23 August 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

The phosphatidylserine receptor is not needed for the recognition of dying cells as previously thought, and instead plays a role in the differentiation of a wide range of tissues during embryogenesis.

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The THO complex as a key mRNP biogenesis factor in development and cell differentiation

Sonia Jimeno, Andrés Aguilera Journal of Biology 2010, 9:6 (28 January 2010)

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The THO complex is implicated in RNA export from the nucleus, but exactly how is not clear. Jimeno and Aguilera discuss a new report on the THOC5 subunit in BMC Biology that suggests a role in differentiation.

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Exploiting the promiscuity of imatinib

Shun J Lee, Jean YJ Wang Journal of Biology 2009, 8:30 (15 April 2009)

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Lee and Wang discuss how the structural flexibility of the cancer drug imatinib (Gleevec) accounts for the drug's off-target promiscuity, illustrated by a structural study published in BMC Structural Biology.

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Cryptic biodiversity in a changing world

Luciano B Beheregaray, Adalgisa Caccone Journal of Biology 2007, 6:9 (21 December 2007)

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Identification of conserved regulatory elements by comparative genome analysis

Boris Lenhard, Albin Sandelin, Luis Mendoza, Pär Engström, Niclas Jareborg, Wyeth W Wasserman Journal of Biology 2003, 2:13 (22 May 2003)

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Hyperactive Wnt signaling changes the developmental potential of embryonic lung endoderm

Tadashi Okubo, Brigid LM Hogan Journal of Biology 2004, 3:11 (8 June 2004)

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Abnormal activation of the Wnt signaling pathway can alter the fate of progenitor cells that normally generate the lung, causing them to create gut cells instead.

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Vernalization in cereals

Elizabeth S Dennis, W James Peacock Journal of Biology 2009, 8:57 (22 June 2009)

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Elizabeth Dennis and James Peacock review recent advances in the molecular basis of the vernalization response that, with the increase in day length at the end of the winter season, triggers flowering.

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Adaptive evolution of centromere proteins in plants and animals

Paul B Talbert, Terri D Bryson, Steven Henikoff Journal of Biology 2004, 3:18 (31 August 2004)

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Centromere-binding proteins, like the DNA they bind, are rapidly evolving, a remarkable finding given that they are essential for every cell division and so would be expected to be very highly conserved.

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Suppression of adaptive immunity to heterologous antigens during Plasmodium infection through hemozoin-induced failure of dendritic cell function

Owain R Millington, Caterina Di Lorenzo, R Phillips, Paul Garside, James M Brewer Journal of Biology 2006, 5:5 (12 April 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Hemozoin pigment, released during malarial infection, is now known to cause dendritic cell failure and subsequent host immunosupression, explaining why people with malaria become prone to infection and respond poorly to vaccines.

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Systematic identification of regulatory proteins critical for T-cell activation

Peter Chu, Jorge Pardo, Haoran Zhao, Connie C Li, Erlina Pali, Mary M Shen, Kunbin Qu, Simon X Yu, Betty CB Huang, Peiwen Yu, Esteban S Masuda, Susan M Molineaux, Frank Kolbinger, Gregorio Aversa, Jan de Vries, Donald G Payan, X Charlene Liao Journal of Biology 2003, 2:21 (15 September 2003)

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Adaptation by introgression

Michael L Arnold, Noland H Martin Journal of Biology 2009, 8:82 (13 October 2009)

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X-chromosome inactivation: the molecular basis of silencing

Barbara Panning Journal of Biology 2008, 7:30 (27 October 2008)

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Reprogramming of the non-coding transcriptome during brain development

Saba Valadkhan, Timothy W Nilsen Journal of Biology 2010, 9:5 (5 February 2010)

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Valadkhan and Nilsen discuss the mystery of long noncoding RNAs and a recent global expression study in BMC Neuroscience that provides a platform for answering fundamental questions about their role in the development of the brain.

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Q&A: What can microfluidics do for stem-cell research?

Marie Csete Journal of Biology 2010, 9:1 (11 February 2010)

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Beyond toxicity: aryl hydrocarbon receptor-mediated functions in the immune system

Brigitta Stockinger Journal of Biology 2009, 8:61 (17 August 2009)

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Brigitta Stockinger argues that the immunosuppressive effects of dioxin and other toxic aryl hydrocarbons may reflect disruption of the regulatory interactions between immune cells, which variably express the specific receptor for these compounds.

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The future of artemisinins: natural, synthetic or recombinant?

Marcel Hommel Journal of Biology 2008, 7:38 (15 December 2008)

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Dishevelled and Wnt signaling: is the nucleus the final frontier?

Raymond Habas, Igor B Dawid Journal of Biology 2005, 4:2 (17 February 2005)

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Malaria pigment paralyzes dendritic cells

Britta C Urban, Stephen Todryk Journal of Biology 2006, 5:4 (12 April 2006)

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Nuclear localization is required for Dishevelled function in Wnt/β-catenin signaling

Keiji Itoh, Barbara K Brott, Gyu-Un Bae, Marianne J Ratcliffe, Sergei Y Sokol Journal of Biology 2005, 4:3 (15 February 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

Dishevelled, a key player in the Wnt/beta-catenin signalling pathway, doesn't only function in the cytoplasm and at the cell membrane, but must be imported into the nucleus to perform at least one key aspect of its function.

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Limb regeneration revisited

Jessica L Whited, Clifford J Tabin Journal of Biology 2009, 8:5 (13 January 2009)

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The ribosome returned

Peter B Moore Journal of Biology 2009, 8:8 (26 January 2009)

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Observing bacteria through the lens of social evolution

Carey D Nadell, Bonnie L Bassler, Simon A Levin Journal of Biology 2008, 7:27 (30 September 2008)

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