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51.
2218 Accesses
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Regulation of metabolism in Caenorhabditis elegans longevity
Marco Gallo, Donald L Riddle Journal of Biology 2010, 9:7 (10 February 2010)
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Editor’s summary
A metabolomic quest for universals in the control of lifespan recently reported in BMC Biology implicates branched-chain amino acid pools. Gallo and Riddle review the lessons from C.elegans in research on longevity, and discuss the implications of the metabolomic research.
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52.
2210 Accesses
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A global analysis of genetic interactions in Caenorhabditis elegans
Alexandra B Byrne, Matthew T Weirauch, Victoria Wong, Martina Koeva, Scott J Dixon, Joshua M Stuart, Peter J Roy Journal of Biology 2007, 6:8 (26 September 2007)
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Editor’s summary
A C. elegans genetic-interaction network built by combining gene mutants and knockdowns is the largest animal network to date, revealing redundancy among functional modules and surprisingly little conservation of network connections compared to yeast.
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53.
2202 Accesses
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Astrocytes derived from glial-restricted precursors promote spinal cord repair
Jeannette E Davies, Carol Huang, Christoph Proschel, Mark Noble, Margot Mayer-Proschel, Stephen JA Davies Journal of Biology 2006, 5:7 (27 April 2006)
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Editor’s summary
Significantly better spinal cord repair in rats results from transplanting specific pre-differentiated cells, cultured to become immature neural-support cells, than from transplanting undifferentiated embryonic stem cells.
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54.
2130 Accesses
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How chemotherapy damages the central nervous system
Christina A Meyers Journal of Biology 2008, 7:11 (22 April 2008)
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55.
2089 Accesses
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A circuit supporting concentration-invariant odor perception in Drosophila
Kenta Asahina, Matthieu Louis, Silvia Piccinotti, Leslie B Vosshall Journal of Biology 2009, 8:9 (26 January 2009)
Abstract | Full text | PDF
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| F1000 Biology
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Editor’s summary
In Drosophila, inhibitory interneurons are progressively recruited as olfactory sensory neurons are activated at increasing odor concentrations, allowing the flies to identify distinct odors at different intensities.
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56.
2085 Accesses
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The short coiled-coil domain-containing protein UNC-69 cooperates with UNC-76 to regulate axonal outgrowth and normal presynaptic organization in Caenorhabditis elegans
Cheng-Wen Su, Suzanne Tharin, Yishi Jin, Bruce Wightman, Mona Spector, David Meili, Nancy Tsung, Christa Rhiner, Dimitris Bourikas, Esther Stoeckli, Gian Garriga, H Robert Horvitz, Michael O Hengartner Journal of Biology 2006, 5:9 (25 May 2006)
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Editor’s summary
Newly characterized in C. elegans, the protein UNC-69 interacts with kinesin–binding protein UNC-76 in a complex associated with trafficking vesicles along axons - a process that drives axon growth and helps synapse formation.
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57.
2079 Accesses
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Metabolic reconfiguration is a regulated response to oxidative stress
Chris M Grant Journal of Biology 2008, 7:1 (25 January 2008)
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58.
2043 Accesses
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Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network
Lan V Zhang, Oliver D King, Sharyl L Wong, Debra S Goldberg, Amy HY Tong, Guillaume Lesage, Brenda Andrews, Howard Bussey, Charles Boone, Frederick P Roth Journal of Biology 2005, 4:6 (1 June 2005)
Abstract | Full text | PDF
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| F1000 Biology
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Editor’s summary
The multiple complex biological interactions in a yeast cell can be mapped in a simple graphical form, enhancing our understanding of the networks of interaction by which components of a cell influence one another.
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59.
2037 Accesses
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Promoter architecture and the evolvability of gene expression
Itay Tirosh, Naama Barkai, Kevin J Verstrepen Journal of Biology 2009, 8:95 (14 December 2009)
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Editor’s summary
Major evolutionary change depends on changes in gene expression. Itay Tirosh and colleagues review recent research on the influence of promoter architecture and mutations in regulatory proteins on divergent expression patterns and suggest what is required for evolvability.
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60.
2010 Accesses
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The 'stem cell' concept: is it holding us back?
Arthur D Lander Journal of Biology 2009, 8:70 (21 September 2009)
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Editor’s summary
Arthur Lander argues that the molecular definition of a stem cell is a mirage and 'stemness' is an emergent property of cells in their physiological context, so that the current concept is arguably an obstacle to research.
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61.
1980 Accesses
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The cattle genome reveals its secrets
David W Burt Journal of Biology 2009, 8:36 (24 April 2009)
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Editor’s summary
Burt discusses the impact of the recently sequenced Bovine genome on our understanding of bovine phylogeny and the genomics of domestication.
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62.
1972 Accesses
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Evidence for large domains of similarly expressed genes in the Drosophila genome
Paul T Spellman, Gerald M Rubin Journal of Biology 2002, 1:5 (18 June 2002)
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| F1000 Biology
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63.
1971 Accesses
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Imp-L2, a putative homolog of vertebrate IGF-binding protein 7, counteracts insulin signaling in Drosophila and is essential for starvation resistance
Basil Honegger, Milos Galic, Katja Köhler, Franz Wittwer, Walter Brogiolo, Ernst Hafen, Hugo Stocker Journal of Biology 2008, 7:10 (15 April 2008)
Abstract | Full text | PDF
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Editor’s summary
The first functional insulin-binding protein identified in invertebrates, Imp-L2, controls Drosophila body size by regulating insulin-mediated growth and is essential for larval survival and dampening insulin signaling under starvation conditions.
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64.
1962 Accesses
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Differences in the way a mammalian cell and yeast cells coordinate cell growth and cell-cycle progression
Ian Conlon, Martin Raff Journal of Biology 2003, 2:7 (24 April 2003)
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| F1000 Biology
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65.
1955 Accesses
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Regeneration review reprise
Jessica L Whited, Clifford J Tabin Journal of Biology 2010, 9:15 (16 February 2010)
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Editor’s summary
Stem cell biology and new high throughput techniques are inspiring new advances in research on regeneration. Whited and Tabin discuss recent developments, including two recent reports in BMC Biology that may mean a reevaluation of the regenerative prospects for humans.
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66.
1947 Accesses
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Global analysis of X-chromosome dosage compensation
Vaijayanti Gupta, Michael Parisi, David Sturgill, Rachel Nuttall, Michael Doctolero, Olga K Dudko, James D Malley, P Scott Eastman, Brian Oliver Journal of Biology 2006, 5:3 (16 February 2006)
Abstract | Full text | PDF
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| F1000 Biology
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Editor’s summary
In Drosophila germ cells, X chromosome genes are upregulated to balance their expression with that of autosomes; the same happens in somatic cells of mice and nematodes.
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67.
1946 Accesses
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Q&A: What are pharmacological chaperones and why are they interesting?
Dagmar Ringe, Gregory A Petsko Journal of Biology 2009, 8:80 (13 October 2009)
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Editor’s summary
Small molecules that stabilize mutant proteins with high specificity can be used to treat protein misfolding and metabolic diseases: in a Q&A highlighting recent successes, Dagmar Ringe and Gregory Petsko explain how.
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68.
1924 Accesses
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Transplanted astrocytes derived from BMP- or CNTF-treated glial-restricted precursors have opposite effects on recovery and allodynia after spinal cord injury
Jeannette E Davies, Christoph Pröschel, Ningzhe Zhang, Mark Noble, Margot Mayer-Pröschel, Stephen JA Davies Journal of Biology 2008, 7:24 (19 September 2008)
Abstract | Full text | PDF
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Editor’s summary
Glial cells can promote the repair of damaged spinal cord, but experiments in rats show that while some promote functional recovery others cause abnormal growth and pain, depending on the growth factor used to cultivate them in culture.
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69.
1900 Accesses
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The genetics of gender and life span
John Tower, Michelle Arbeitman Journal of Biology 2009, 8:38 (29 April 2009)
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Editor’s summary
Tower and Arbeitman discuss two studies in BMC Evolutionary Biology showing that the genetic differences between male and female seed beetles and in fruit flies have a significant effect upon aging and life span.
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70.
1895 Accesses
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Notch signaling, the segmentation clock, and the patterning of vertebrate somites
Julian Lewis, Anja Hanisch, Maxine Holder Journal of Biology 2009, 8:44 (22 May 2009)
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Editor’s summary
Julian Lewis and colleagues review the part played by the Notch signaling pathway in the emergence of somites from the embryonic mesoderm and their later differentiation.
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71.
1892 Accesses
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Environmental stresses can alleviate the average deleterious effect of mutations
Roy Kishony, Stanislas Leibler Journal of Biology 2003, 2:14 (29 May 2003)
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| F1000 Biology
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72.
1859 Accesses
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Islands in the sky: the impact of Pleistocene climate cycles on biodiversity
Allan J Baker Journal of Biology 2008, 7:32 (3 November 2008)
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73.
1835 Accesses
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Apical polarity in three-dimensional culture systems: where to now?
Jamie L Inman, Mina J Bissell Journal of Biology 2010, 9:2 (21 January 2010)
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74.
1796 Accesses
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Q&A: Cooperativity
James E Ferrell Journal of Biology 2009, 8:53 (16 June 2009)
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Editor’s summary
James Ferrell explains in Q&A format how cooperativity can tune the behaviour of biological macromolecules to their physiological functions, and can be achieved in many different ways.
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75.
1791 Accesses
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RNA interference in nematodes and the chance that favored Sydney Brenner
Marie-Anne Félix Journal of Biology 2008, 7:34 (13 November 2008)
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76.
1770 Accesses
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Forward genetics in Tribolium castaneum: opening new avenues of research in arthropod biology
Andrew D Peel Journal of Biology 2009, 8:106 (30 December 2009)
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Editor’s summary
Peel discusses the merits of the flour beetle over the fruit fly as a new arthropod model organism and describes how a new mutagenesis screen published in BMC Biology increases the usefulness of this creature.
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77.
1768 Accesses
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Infectious causes of cancer and their detection
Lucy Dalton-Griffin, Paul Kellam Journal of Biology 2009, 8:67 (11 August 2009)
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Editor’s summary
Lucy Dalton-Griffin and Paul Kellam discuss the role of viruses in cancer following a recent paper in BMC Medical Genomics describing a new method of detecting viral DNA in cancer cells.
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78.
1756 Accesses
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The THO complex as a key mRNP biogenesis factor in development and cell differentiation
Sonia Jimeno, Andrés Aguilera Journal of Biology 2010, 9:6 (28 January 2010)
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Editor’s summary
The THO complex is implicated in RNA export from the nucleus, but exactly how is not clear. Jimeno and Aguilera discuss a new report on the THOC5 subunit in BMC Biology that suggests a role in differentiation.
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79.
1726 Accesses
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The transcriptome of human monocyte subsets begins to emerge
Fernando O Martinez Journal of Biology 2009, 8:99 (23 December 2009)
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Editor’s summary
Monocytes are circulating cells that can differentiate into macrophages with either repair and maintenance or inflammatory properties. Martinez discusses recent papers, including one published in BMC Genomics, that help define these distinct properties and thus identify therapeutic targets.
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80.
1710 Accesses
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Exploiting the promiscuity of imatinib
Shun J Lee, Jean YJ Wang Journal of Biology 2009, 8:30 (15 April 2009)
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Editor’s summary
Lee and Wang discuss how the structural flexibility of the cancer drug imatinib (Gleevec) accounts for the drug's off-target promiscuity, illustrated by a structural study published in BMC Structural Biology.
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81.
1708 Accesses
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Hyperactive Wnt signaling changes the developmental potential of embryonic lung endoderm
Tadashi Okubo, Brigid LM Hogan Journal of Biology 2004, 3:11 (8 June 2004)
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Editor’s summary
Abnormal activation of the Wnt signaling pathway can alter the fate of progenitor cells that normally generate the lung, causing them to create gut cells instead.
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82.
1700 Accesses
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Cryptic biodiversity in a changing world
Luciano B Beheregaray, Adalgisa Caccone Journal of Biology 2007, 6:9 (21 December 2007)
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83.
1670 Accesses
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Vernalization in cereals
Elizabeth S Dennis, W James Peacock Journal of Biology 2009, 8:57 (22 June 2009)
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Editor’s summary
Elizabeth Dennis and James Peacock review recent advances in the molecular basis of the vernalization response that, with the increase in day length at the end of the winter season, triggers flowering.
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84.
1663 Accesses
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The phosphatidylserine receptor has essential functions during embryogenesis but not in apoptotic cell removal
Jens Böse, Achim D Gruber, Laura Helming, Stefanie Schiebe, Ivonne Wegener, Martin Hafner, Marianne Beales, Frank Köntgen, Andreas Lengeling Journal of Biology 2004, 3:15 (23 August 2004)
Abstract | Full text | PDF
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| F1000 Biology
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Editor’s summary
The phosphatidylserine receptor is not needed for the recognition of dying cells as previously thought, and instead plays a role in the differentiation of a wide range of tissues during embryogenesis.
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85.
1623 Accesses
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Suppression of adaptive immunity to heterologous antigens during Plasmodium infection through hemozoin-induced failure of dendritic cell function
Owain R Millington, Caterina Di Lorenzo, R Phillips, Paul Garside, James M Brewer Journal of Biology 2006, 5:5 (12 April 2006)
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Editor’s summary
Hemozoin pigment, released during malarial infection, is now known to cause dendritic cell failure and subsequent host immunosupression, explaining why people with malaria become prone to infection and respond poorly to vaccines.
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86.
1606 Accesses
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Identification of conserved regulatory elements by comparative genome analysis
Boris Lenhard, Albin Sandelin, Luis Mendoza, Pär Engström, Niclas Jareborg, Wyeth W Wasserman Journal of Biology 2003, 2:13 (22 May 2003)
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87.
1595 Accesses
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Systematic identification of regulatory proteins critical for T-cell activation
Peter Chu, Jorge Pardo, Haoran Zhao, Connie C Li, Erlina Pali, Mary M Shen, Kunbin Qu, Simon X Yu, Betty CB Huang, Peiwen Yu, Esteban S Masuda, Susan M Molineaux, Frank Kolbinger, Gregorio Aversa, Jan de Vries, Donald G Payan, X Charlene Liao Journal of Biology 2003, 2:21 (15 September 2003)
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88.
1587 Accesses
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Adaptive evolution of centromere proteins in plants and animals
Paul B Talbert, Terri D Bryson, Steven Henikoff Journal of Biology 2004, 3:18 (31 August 2004)
Abstract | Full text | PDF
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| F1000 Biology
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Editor’s summary
Centromere-binding proteins, like the DNA they bind, are rapidly evolving, a remarkable finding given that they are essential for every cell division and so would be expected to be very highly conserved.
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89.
1570 Accesses
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Adaptation by introgression
Michael L Arnold, Noland H Martin Journal of Biology 2009, 8:82 (13 October 2009)
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90.
1548 Accesses
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Reprogramming of the non-coding transcriptome during brain development
Saba Valadkhan, Timothy W Nilsen Journal of Biology 2010, 9:5 (5 February 2010)
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Editor’s summary
Valadkhan and Nilsen discuss the mystery of long noncoding RNAs and a recent global expression study in BMC Neuroscience that provides a platform for answering fundamental questions about their role in the development of the brain.
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91.
1544 Accesses
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Q&A: What can microfluidics do for stem-cell research?
Marie Csete Journal of Biology 2010, 9:1 (11 February 2010)
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92.
1536 Accesses
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Dishevelled and Wnt signaling: is the nucleus the final frontier?
Raymond Habas, Igor B Dawid Journal of Biology 2005, 4:2 (17 February 2005)
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93.
1530 Accesses
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Limb regeneration revisited
Jessica L Whited, Clifford J Tabin Journal of Biology 2009, 8:5 (13 January 2009)
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94.
1530 Accesses
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Malaria pigment paralyzes dendritic cells
Britta C Urban, Stephen Todryk Journal of Biology 2006, 5:4 (12 April 2006)
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95.
1518 Accesses
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Beyond toxicity: aryl hydrocarbon receptor-mediated functions in the immune system
Brigitta Stockinger Journal of Biology 2009, 8:61 (17 August 2009)
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Editor’s summary
Brigitta Stockinger argues that the immunosuppressive effects of dioxin and other toxic aryl hydrocarbons may reflect disruption of the regulatory interactions between immune cells, which variably express the specific receptor for these compounds.
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96.
1514 Accesses
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The future of artemisinins: natural, synthetic or recombinant?
Marcel Hommel Journal of Biology 2008, 7:38 (15 December 2008)
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97.
1509 Accesses
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The ribosome returned
Peter B Moore Journal of Biology 2009, 8:8 (26 January 2009)
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98.
1505 Accesses
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Nuclear localization is required for Dishevelled function in Wnt/β-catenin signaling
Keiji Itoh, Barbara K Brott, Gyu-Un Bae, Marianne J Ratcliffe, Sergei Y Sokol Journal of Biology 2005, 4:3 (15 February 2005)
Abstract | Full text | PDF
| PubMed | Cited on BioMed Central
| F1000 Biology
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Editor’s summary
Dishevelled, a key player in the Wnt/beta-catenin signalling pathway, doesn't only function in the cytoplasm and at the cell membrane, but must be imported into the nucleus to perform at least one key aspect of its function.
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99.
1502 Accesses
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X-chromosome inactivation: the molecular basis of silencing
Barbara Panning Journal of Biology 2008, 7:30 (27 October 2008)
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100.
1499 Accesses
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A quantitative analysis of the mechanism that controls body size in Manduca sexta
HF Nijhout, G Davidowitz, DA Roff Journal of Biology 2006, 5:16 (2 August 2006)
Abstract | Full text | PDF
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Editor’s summary
Final body size in the moth Manduca sexta can be predicted from the juvenile caterpillar by modeling three key growth measurements to reveal how growth rate, nutrition and temperature determine eventual body size.
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