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1.
539 Accesses
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Small changes, big results: evolution of morphological discontinuity in mammals
Rodney L Honeycutt Journal of Biology 2008, 7:9 (18 March 2008)
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2.
520 Accesses
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Are we training pit bulls to review our manuscripts?
Virginia Walbot Journal of Biology 2009, 8:24 (9 March 2009)
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Editor’s summary
Virginia Walbot accepts some of the blame for remorselessly negative reviewers, and suggests a training program for graduate students and post docs that will deliver a fairer assessment of manuscripts.
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3.
405 Accesses
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Growth control of the eukaryote cell: a systems biology study in yeast
Juan I Castrillo, Leo A Zeef, David C Hoyle, Nianshu Zhang, Andrew Hayes, David CJ Gardner, Michael J Cornell, June Petty, Luke Hakes, Leanne Wardleworth, Bharat Rash, Marie Brown, Warwick B Dunn, David Broadhurst, Kerry O'Donoghue, Svenja S Hester, Tom PJ Dunkley, Sarah R Hart, Neil Swainston, Peter Li, Simon J Gaskell, Norman W Paton, Kathryn S Lilley, Douglas B Kell, Stephen G Oliver Journal of Biology 2007, 6:4 (30 April 2007)
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Editor’s summary
The first comprehensive systems biology study on growth rate control in yeast integrates information from the transcriptome, proteome and metabolome to reveal how cell growth underlies key cellular and development processes.
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4.
402 Accesses
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Top dogs: wolf domestication and wealth
Carlos A Driscoll, David W Macdonald Journal of Biology 2010, 9:10 (24 February 2010)
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Commenting on a phylogeographic analysis in BMC Biology that supports a Middle Eastern origin of small dogs, Driscoll and Macdonald speculate on the implications of wolf domestication and size reduction occurring at a time of transition between hunter-gatherer and sedentary societies.
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5.
374 Accesses
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Music, memory and emotion
Lutz Jäncke Journal of Biology 2008, 7:21 (8 August 2008)
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6.
344 Accesses
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Open access to the scientific journal literature
Peter Suber Journal of Biology 2002, 1:3 (18 June 2002)
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7.
344 Accesses
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Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress
Markus Ralser, Mirjam M Wamelink, Axel Kowald, Birgit Gerisch, Gino Heeren, Eduard A Struys, Edda Klipp, Cornelis Jakobs, Michael Breitenbach, Hans Lehrach, Sylvia Krobitsch Journal of Biology 2007, 6:10 (21 December 2007)
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Editor’s summary
Yeast and C. elegans share a conserved cellular mechanism that counteracts the fatal consequences of oxidative stress by enabling the redirection of metabolic flux from glycolysis to the pentose phosphate pathway.
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8.
332 Accesses
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Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers Journal of Biology 2006, 5:11 (8 June 2006)
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Editor’s summary
A new literature-based yeast database documents over 33,000 biological interactions, manually curated from the primary literature, and provides an invaluable resource to benchmark high-throughput methods in the study of complex networks.
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9.
329 Accesses
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Acoel and platyhelminth models for stem-cell research
Alexandra E Bely, James M Sikes Journal of Biology 2010, 9:14 (16 February 2010)
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Editor’s summary
The bodies of platyhelminth and acoel worms are continually renewed from large pools of somatic stem cells. Bely and Sikes discuss their consequent attractiveness for stem cell research, and how recent studies, including one in BMC Developmental Biology, reveal aspects of the cellular dynamics and molecular basis of stem-cell function in these animals.
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10.
313 Accesses
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Madm (Mlf1 adapter molecule) cooperates with Bunched A to promote growth in Drosophila
Silvia Gluderer, Erich Brunner, Markus Germann, Virginija Jovaisaite, Changqing Li, Cyrill A Rentsch, Ernst Hafen, Hugo Stocker Journal of Biology 2010, 9:9 (11 February 2010)
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Editor’s summary
Stocker and colleagues identify and analyze a growth-promoting complex in Drosophila, formed between the putative transcription factor BunA, for which human homologs can functionally substitute, and the adaptor protein Madm.
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11.
308 Accesses
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A global analysis of genetic interactions in Caenorhabditis elegans
Alexandra B Byrne, Matthew T Weirauch, Victoria Wong, Martina Koeva, Scott J Dixon, Joshua M Stuart, Peter J Roy Journal of Biology 2007, 6:8 (26 September 2007)
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Editor’s summary
A C. elegans genetic-interaction network built by combining gene mutants and knockdowns is the largest animal network to date, revealing redundancy among functional modules and surprisingly little conservation of network connections compared to yeast.
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12.
302 Accesses
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Systemic 5-fluorouracil treatment causes a syndrome of delayed myelin destruction in the central nervous system
Ruolan Han, Yin M Yang, Joerg Dietrich, Anne Luebke, Margot Mayer-Pröschel, Mark Noble Journal of Biology 2008, 7:12 (22 April 2008)
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Editor’s summary
The chemotherapy drug, 5-fluorouracil, causes delayed degeneration in the central nervous system of animals, a newly identified type of damage that helps explain the cognitive defects or `chemobrain` symptoms associated with cancer treatment.
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13.
284 Accesses
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The Drosophila Forkhead transcription factor FOXO mediates the reduction in cell number associated with reduced insulin signaling
Martin A Jünger, Felix Rintelen, Hugo Stocker, Jonathan D Wasserman, Mátyás Végh, Thomas Radimerski, Michael E Greenberg, Ernst Hafen Journal of Biology 2003, 2:20 (7 August 2003)
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14.
277 Accesses
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The origin and evolution of lactation
Anthony V Capuco, R Michael Akers Journal of Biology 2009, 8:37 (24 April 2009)
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Editor’s summary
Capuco and Akers review the biology of lactation and discuss a new report in Genome Biology that compares the bovine genome with six other mammalian genomes to study how lactation and its regulation evolved.
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15.
274 Accesses
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Conservation of core gene expression in vertebrate tissues
Esther T Chan, Gerald T Quon, Gordon Chua, Tomas Babak, Miles Trochesset, Ralph A Zirngibl, Jane Aubin, Michael JH Ratcliffe, Andrew Wilde, Michael Brudno, Quaid D Morris, Timothy R Hughes Journal of Biology 2009, 8:33 (16 April 2009)
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Editor’s summary
High conservation of tissue-specific expression is found across vertebrates yet there is a lack of conservation in common regulatory sequences/signatures.
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16.
273 Accesses
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Complexes between the LKB1 tumor suppressor, STRADα/β and MO25α/β are upstream kinases in the AMP-activated protein kinase cascade
Simon A Hawley, Jérôme Boudeau, Jennifer L Reid, Kirsty J Mustard, Lina Udd, Tomi P Mäkelä, Dario R Alessi, D Grahame Hardie Journal of Biology 2003, 2:28 (24 September 2003)
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17.
268 Accesses
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SnoPatrol: how many snoRNA genes are there?
Paul P Gardner, Alex Bateman, Anthony M Poole Journal of Biology 2010, 9:4 (25 January 2010)
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Editor’s summary
Gardner, Bateman and Poole review the current knowledge of small nucleolar RNAs (snoRNAs) and discuss two BMC Genomic papers reporting the identification of novel snoRNAs and the likelihood that there are many more out there.
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18.
266 Accesses
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The mathematics of sexual attraction
José A Feijó Journal of Biology 2010, 9:18 (29 March 2010)
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19.
263 Accesses
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Bridge helix and trigger loop perturbations generate superactive RNA polymerases
Lin Tan, Simone Wiesler, Dominika Trzaska, Hannah C Carney, Robert OJ Weinzierl Journal of Biology 2008, 7:40 (2 December 2008)
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Editor’s summary
Mutations targeted to key functional areas of RNA polymerases can generate superactive enzymes that suggest how conformational changes in specialized domains of the enzyme contribute to the catalytic cycle.
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20.
261 Accesses
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Evolution underground: shedding light on the diversification of subterranean insects
Carlos Juan, Brent C Emerson Journal of Biology 2010, 9:17 (11 March 2010)
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Editor’s summary
Juan and Emerson discuss the reconstruction of the molecular phylogeny of a large Mediterranean cave-dwelling beetle clade recently presented in BMC Evolutionary Biology, and the implications for the evolutionary origin of the beetle ancestor.
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21.
260 Accesses
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Endothelial adherens junctions and the actin cytoskeleton: an 'infinity net'?
Maria Grazia Lampugnani Journal of Biology 2010, 9:16 (8 April 2010)
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22.
254 Accesses
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Genome of a songbird unveiled
Raphael Pinaud Journal of Biology 2010, 9:19 (1 April 2010)
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Editor’s summary
Pinaud heralds the publication of the zebra finch genome, reviewing some of the most exciting findings of this pioneering effort and explaining how this songbird model offers unique insights into auditory learning, singing behaviour and other biological phenomena.
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23.
251 Accesses
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Making progress in genetic kin recognition among vertebrates
Jane L Hurst, Robert J Beynon Journal of Biology 2010, 9:13 (17 February 2010)
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Editor’s summary
Highlighting recent research in BMC Evolutionary Biology that analyzes the scent profiles of ring-tailed lemurs in relation to their genetic distance, Hurst and Benyon discuss recent progress and remaining challenges in deciphering how vertebrates recognise kin by their smell.
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24.
233 Accesses
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The bacterial pathogen Listeria monocytogenes: an emerging model in prokaryotic transcriptomics
Pascale Cossart, Cristel Archambaud Journal of Biology 2009, 8:107 (30 December 2009)
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Editor’s summary
Cossart and Archambaud discuss the implications of the outcome of deep RNA sequencing used to probe the virulence toolkit of Listeria monocytogenes, reported in a recent paper in BMC Genomics.
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25.
231 Accesses
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The short coiled-coil domain-containing protein UNC-69 cooperates with UNC-76 to regulate axonal outgrowth and normal presynaptic organization in Caenorhabditis elegans
Cheng-Wen Su, Suzanne Tharin, Yishi Jin, Bruce Wightman, Mona Spector, David Meili, Nancy Tsung, Christa Rhiner, Dimitris Bourikas, Esther Stoeckli, Gian Garriga, H Robert Horvitz, Michael O Hengartner Journal of Biology 2006, 5:9 (25 May 2006)
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Editor’s summary
Newly characterized in C. elegans, the protein UNC-69 interacts with kinesin–binding protein UNC-76 in a complex associated with trafficking vesicles along axons - a process that drives axon growth and helps synapse formation.
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26.
226 Accesses
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High-resolution quantitative imaging of mammalian and bacterial cells using stable isotope mass spectrometry
Claude Lechene, Francois Hillion, Greg McMahon, Douglas Benson, Alan M Kleinfeld, J Patrick Kampf, Daniel Distel, Yvette Luyten, Joseph Bonventre, Dirk Hentschel, Kwon Park, Susumu Ito, Martin Schwartz, Gilles Benichou, Georges Slodzian Journal of Biology 2006, 5:20 (5 October 2006)
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Editor’s summary
For the first time it is possible to image and quantify at nanometer resolution biological samples labeled with stable isotopes, using multi-isotope imaging mass spectrometry, applicable to all fields of biomedical research.
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27.
226 Accesses
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Scale-eating cichlids: from hand(ed) to mouth
A Richard Palmer Journal of Biology 2010, 9:11 (24 February 2010)
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Editor’s summary
Palmer discusses recent studies, including one in BMC Biology, suggesting that mouth bending in scale-eating cichlids cannot be explained by frequency dependent selection alone, but that the behavior of the fish may amplify mouth asymmetry during growth.
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28.
225 Accesses
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No better time to FRET: shedding light on host pathogen interactions
Richard D Hayward, Jon D Goguen, John M Leong Journal of Biology 2010, 9:12 (18 February 2010)
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Editor’s summary
Hayward and colleagues discuss the promise of fluorescence resonance energy transfer (FRET)-based techniques to study the spatio-temporal subversion of host cell signaling by pathogens, reviewing the few existing examples of this, which include a recent paper in BMC Biology, to illustrate the power of an approach that has been surprisingly under-exploited to date.
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29.
210 Accesses
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Robust and specific inhibition of microRNAs in Caenorhabditis elegans
Samrat T Kundu, Frank J Slack Journal of Biology 2010, 9:20 (1 April 2010)
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Editor’s summary
Frank Slack and Samrat Kundu highlight a refinement of the antisense strategy used to inhibit miRNAs in C.elegans, published in Silence, with an adaptation that supports transmission through the germline, and combinatorial use to target several different miRNAs in developing tissues.
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30.
207 Accesses
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Parasite immunomodulation and polymorphisms of the immune system
Rick M Maizels Journal of Biology 2009, 8:62 (5 August 2009)
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Editor’s summary
Rick Maizels discusses a recent paper in BMC Biology on wild mammals that lend support to the hygiene hypothesis, and explains why genetic variants that reduce parasite-induced immunosuppression are associated with an increase in allergic reactions.
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31.
206 Accesses
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Small-molecule modulators of Hedgehog signaling: identification and characterization of Smoothened agonists and antagonists
Maria Frank-Kamenetsky, Xiaoyan M Zhang, Steve Bottega, Oivin Guicherit, Hynek Wichterle, Henryk Dudek, David Bumcrot, Frank Y Wang, Simon Jones, Janine Shulok, Lee L Rubin, Jeffery A Porter Journal of Biology 2002, 1:10 (6 November 2002)
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Editor’s summary
Characterization of small-molecule agonists and antagonists of the Hedgehog signaling pathway reveals that these candidate therapeutics act at the level of the pathway activator Smoothened, which may normally be regulated by an endogenous small molecule.
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32.
204 Accesses
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A circuit supporting concentration-invariant odor perception in Drosophila
Kenta Asahina, Matthieu Louis, Silvia Piccinotti, Leslie B Vosshall Journal of Biology 2009, 8:9 (26 January 2009)
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Editor’s summary
In Drosophila, inhibitory interneurons are progressively recruited as olfactory sensory neurons are activated at increasing odor concentrations, allowing the flies to identify distinct odors at different intensities.
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33.
204 Accesses
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Timing the first human migration into eastern Asia
Roscoe Stanyon, Marco Sazzini, Donata Luiselli Journal of Biology 2009, 8:18 (6 February 2009)
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34.
194 Accesses
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Q&A: Epistasis
Frederick P Roth, Howard D Lipshitz, Brenda J Andrews Journal of Biology 2009, 8:35 (22 May 2009)
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Editor’s summary
The term epistasis has at least three meanings in biology. Brenda Andrews and colleagues explain in Q&A format how in its classical sense, epistasis allows biological pathways to be defined.
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35.
194 Accesses
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Targeting TNF-α for cancer therapy
Elizabeth R Burton, Steven K Libutti Journal of Biology 2009, 8:85 (23 October 2009)
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36.
190 Accesses
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What are journals for?
Miranda Robertson Journal of Biology 2009, 8:1 (27 January 2009)
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Editor’s summary
Journal of Biology launches a re-review opt-out experiment in response to widespread dissatisfaction with peer review, and publishes the first of two new regular features - a full review on the ribosome and a question-and-answer feature on systems biology.
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37.
187 Accesses
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Differences in the way a mammalian cell and yeast cells coordinate cell growth and cell-cycle progression
Ian Conlon, Martin Raff Journal of Biology 2003, 2:7 (24 April 2003)
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38.
190 Accesses
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Global analysis of X-chromosome dosage compensation
Vaijayanti Gupta, Michael Parisi, David Sturgill, Rachel Nuttall, Michael Doctolero, Olga K Dudko, James D Malley, P Scott Eastman, Brian Oliver Journal of Biology 2006, 5:3 (16 February 2006)
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Editor’s summary
In Drosophila germ cells, X chromosome genes are upregulated to balance their expression with that of autosomes; the same happens in somatic cells of mice and nematodes.
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39.
187 Accesses
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Search for a 'Tree of Life' in the thicket of the phylogenetic forest
Pere Puigbò, Yuri I Wolf, Eugene V Koonin Journal of Biology 2009, 8:59 (13 July 2009)
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Editor’s summary
Koonin and colleagues, comparing a forest of 7000 phylogenetic trees, discern vertical inheritance even at the earliest stages of prokaryotic evolution, despite horizontal gene transfer, but the branching order of the earliest radiations may never be resolved.
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40.
188 Accesses
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Compound developmental eye disorders following inactivation of TGFβ signaling in neural-crest stem cells
Lars M Ittner, Heiko Wurdak, Kerstin Schwerdtfeger, Thomas Kunz, Fabian Ille, Per Leveen, Tord A Hjalt, Ueli Suter, Stefan Karlsson, Farhad Hafezi, Walter Born, Lukas Sommer Journal of Biology 2005, 4:11 (14 December 2005)
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Editor’s summary
Important structures in developing mouse eyes originate from neural crest cells controlled by TGFbeta signals from the lens, providing insight into human conditions that results in glaucoma and blindness.
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41.
186 Accesses
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The functional landscape of mouse gene expression
Wen Zhang, Quaid D Morris, Richard Chang, Ofer Shai, Malina A Bakowski, Nicholas Mitsakakis, Naveed Mohammad, Mark D Robinson, Ralph Zirngibl, Eszter Somogyi, Nancy Laurin, Eftekhar Eftekharpour, Eric Sat, Jörg Grigull, Qun Pan, Wen-Tao Peng, Nevan Krogan, Jack Greenblatt, Michael Fehlings, Derek van der Kooy, Jane Aubin, Benoit G Bruneau, Janet Rossant, Benjamin J Blencowe, Brendan J Frey, Timothy R Hughes Journal of Biology 2004, 3:21 (6 December 2004)
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Editor’s summary
Gene function in mammals can be quickly and reliably predicted using a quantitative analysis of tissue-specific patterns of RNA expression.
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42.
183 Accesses
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The hydrodynamics of dolphin drafting
Daniel Weihs Journal of Biology 2004, 3:8 (4 May 2004)
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Editor’s summary
Models of the hydrodynamic forces between two swimming dolphins show that baby dolphins keep up with their more powerful mothers by getting an almost energetically "free ride" in their slipstream.
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43.
183 Accesses
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Why didn't Darwin discover Mendel's laws?
Jonathan C Howard Journal of Biology 2009, 8:15 (24 February 2009)
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Editor’s summary
In an opinion piece, Jonathan Howard suggests that Darwin failed to discover the laws of inheritance (Mendel’s laws) due to his focus on small quantitative variations as the raw material of evolution.
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44.
183 Accesses
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Regeneration review reprise
Jessica L Whited, Clifford J Tabin Journal of Biology 2010, 9:15 (16 February 2010)
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Editor’s summary
Stem cell biology and new high throughput techniques are inspiring new advances in research on regeneration. Whited and Tabin discuss recent developments, including two recent reports in BMC Biology that may mean a reevaluation of the regenerative prospects for humans.
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45.
181 Accesses
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Making the jump: new insights into the mechanism of trans-translation
Jacek Wower, Iwona K Wower, Christian Zwieb Journal of Biology 2008, 7:17 (30 June 2008)
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46.
180 Accesses
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Astrocytes derived from glial-restricted precursors promote spinal cord repair
Jeannette E Davies, Carol Huang, Christoph Proschel, Mark Noble, Margot Mayer-Proschel, Stephen JA Davies Journal of Biology 2006, 5:7 (27 April 2006)
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Editor’s summary
Significantly better spinal cord repair in rats results from transplanting specific pre-differentiated cells, cultured to become immature neural-support cells, than from transplanting undifferentiated embryonic stem cells.
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47.
177 Accesses
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Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network
Lan V Zhang, Oliver D King, Sharyl L Wong, Debra S Goldberg, Amy HY Tong, Guillaume Lesage, Brenda Andrews, Howard Bussey, Charles Boone, Frederick P Roth Journal of Biology 2005, 4:6 (1 June 2005)
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Editor’s summary
The multiple complex biological interactions in a yeast cell can be mapped in a simple graphical form, enhancing our understanding of the networks of interaction by which components of a cell influence one another.
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48.
176 Accesses
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A functional genomic analysis of cell morphology using RNA interference
AA Kiger, B Baum, S Jones, MR Jones, A Coulson, C Echeverri, N Perrimon Journal of Biology 2003, 2:27 (1 October 2003)
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49.
174 Accesses
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The water flea Daphnia - a 'new' model system for ecology and evolution?
Angelika Stollewerk Journal of Biology 2010, 9:21 (13 January 2010)
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50.
176 Accesses
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ERK1 and ERK2 mitogen-activated protein kinases affect Ras-dependent cell signaling differentially
Chiara Vantaggiato, Ivan Formentini, Attilio Bondanza, Chiara Bonini, Luigi Naldini, Riccardo Brambilla Journal of Biology 2006, 5:14 (28 June 2006)
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Editor’s summary
The mitogen-activated protein kinases ERK1 and ERK2 have unexpectedly independent roles in normal and malignant Ras-dependent cell proliferation; ERK2 controls normal cell proliferation whereas ERK1 antagonizes ERK2 activity.
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51.
175 Accesses
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Metabolic reconfiguration is a regulated response to oxidative stress
Chris M Grant Journal of Biology 2008, 7:1 (25 January 2008)
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52.
174 Accesses
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The effects of lipids on channel function
Anthony G Lee Journal of Biology 2009, 8:86 (6 October 2009)
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53.
171 Accesses
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Imp-L2, a putative homolog of vertebrate IGF-binding protein 7, counteracts insulin signaling in Drosophila and is essential for starvation resistance
Basil Honegger, Milos Galic, Katja Köhler, Franz Wittwer, Walter Brogiolo, Ernst Hafen, Hugo Stocker Journal of Biology 2008, 7:10 (15 April 2008)
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Editor’s summary
The first functional insulin-binding protein identified in invertebrates, Imp-L2, controls Drosophila body size by regulating insulin-mediated growth and is essential for larval survival and dampening insulin signaling under starvation conditions.
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54.
169 Accesses
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Apes, lice and prehistory
Robin A Weiss Journal of Biology 2009, 8:20 (10 February 2009)
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Editor’s summary
In a special issue to celebrate the bicentennial of Darwin's birth, Robin Weiss reviews recent speculations on human prehistory based on louse phylogeny, and adds his own on the origins of pubic hair.
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55.
169 Accesses
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Hyperactive Wnt signaling changes the developmental potential of embryonic lung endoderm
Tadashi Okubo, Brigid LM Hogan Journal of Biology 2004, 3:11 (8 June 2004)
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Editor’s summary
Abnormal activation of the Wnt signaling pathway can alter the fate of progenitor cells that normally generate the lung, causing them to create gut cells instead.
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56.
167 Accesses
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Notch signaling, the segmentation clock, and the patterning of vertebrate somites
Julian Lewis, Anja Hanisch, Maxine Holder Journal of Biology 2009, 8:44 (22 May 2009)
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Editor’s summary
Julian Lewis and colleagues review the part played by the Notch signaling pathway in the emergence of somites from the embryonic mesoderm and their later differentiation.
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57.
167 Accesses
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Generalized immune activation as a direct result of activated CD4+ T cell killing
Rute Marques, Adam Williams, Urszula Eksmond, Andy Wullaert, Nigel Killeen, Manolis Pasparakis, Dimitris Kioussis, George Kassiotis Journal of Biology 2009, 8:93 (27 November 2009)
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Editor’s summary
HIV causes immunodeficiency by deleting activated CD4 T lymphocytes, but paradoxically also causes general immune activation. Kassiotis and colleagues have mimicked this effect by using genetic engineering to delete activated T cells in mice, and show that in the mice it is due to loss of regulatory T cells.
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58.
168 Accesses
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Dosage compensation is less effective in birds than in mammals
Yuichiro Itoh, Esther Melamed, Xia Yang, Kathy Kampf, Susanna Wang, Nadir Yehya, Atila Van Nas, Kirstin Replogle, Mark R Band, David F Clayton, Eric E Schadt, Aldons J Lusis, Arthur P Arnold Journal of Biology 2007, 6:2 (22 March 2007)
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Editor’s summary
Male:female ratios of gene expression in zebra finch and chicken reveal that birds, unlike mammals, have surprisingly ineffective sex-chromosome dosage compensation mechanisms resulting in an imbalance between autosomal and sex-linked genes.
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59.
166 Accesses
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Promoter architecture and the evolvability of gene expression
Itay Tirosh, Naama Barkai, Kevin J Verstrepen Journal of Biology 2009, 8:95 (14 December 2009)
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Editor’s summary
Major evolutionary change depends on changes in gene expression. Itay Tirosh and colleagues review recent research on the influence of promoter architecture and mutations in regulatory proteins on divergent expression patterns and suggest what is required for evolvability.
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60.
163 Accesses
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Oxidative stress, thermogenesis and evolution of uncoupling proteins
Eduardo Rial, Rafael Zardoya Journal of Biology 2009, 8:58 (16 June 2009)
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61.
163 Accesses
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Adaptations of proteins to cellular and subcellular pH
Bertrand Garcia-Moreno Journal of Biology 2009, 8:98 (2 December 2009)
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Editor’s summary
Protein function and stability are acutely sensitive to pH, which varies in different subcellular compartments. Garcia-Moreno discusses research recently reported in BMC Biology suggesting that adaptation to different compartments is reflected in charge distribution.
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62.
161 Accesses
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Environmental stresses can alleviate the average deleterious effect of mutations
Roy Kishony, Stanislas Leibler Journal of Biology 2003, 2:14 (29 May 2003)
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63.
161 Accesses
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Mapping the protistan 'rare biosphere'
Scott C Dawson, Kari D Hagen Journal of Biology 2009, 8:105 (29 December 2009)
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Editor’s summary
Dawson and Hagen discuss our current underestimation of the ecological complexity of protist communities in the light of a recent paper in BMC Biology that reports an expanded map of microbial diversity using high throughput sequencing strategy.
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64.
160 Accesses
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Transplanted astrocytes derived from BMP- or CNTF-treated glial-restricted precursors have opposite effects on recovery and allodynia after spinal cord injury
Jeannette E Davies, Christoph Pröschel, Ningzhe Zhang, Mark Noble, Margot Mayer-Pröschel, Stephen JA Davies Journal of Biology 2008, 7:24 (19 September 2008)
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Editor’s summary
Glial cells can promote the repair of damaged spinal cord, but experiments in rats show that while some promote functional recovery others cause abnormal growth and pain, depending on the growth factor used to cultivate them in culture.
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65.
159 Accesses
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Systematic identification of regulatory proteins critical for T-cell activation
Peter Chu, Jorge Pardo, Haoran Zhao, Connie C Li, Erlina Pali, Mary M Shen, Kunbin Qu, Simon X Yu, Betty CB Huang, Peiwen Yu, Esteban S Masuda, Susan M Molineaux, Frank Kolbinger, Gregorio Aversa, Jan de Vries, Donald G Payan, X Charlene Liao Journal of Biology 2003, 2:21 (15 September 2003)
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66.
158 Accesses
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Apical polarity in three-dimensional culture systems: where to now?
Jamie L Inman, Mina J Bissell Journal of Biology 2010, 9:2 (21 January 2010)
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67.
155 Accesses
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CNS progenitor cells and oligodendrocytes are targets of chemotherapeutic agents in vitro and in vivo
Joerg Dietrich, Ruolan Han, Yin Yang, Margot Mayer-Pröschel, Mark Noble Journal of Biology 2006, 5:22 (30 November 2006)
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Editor’s summary
Chemotherapeutic agents are more toxic to cells of the central nervous system than to cancer cells when administered to mice and cultured cells, providing an explanation for adverse neurological effects of systemic chemotherapy.
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68.
155 Accesses
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Genomics technology for assessing soil pollution
Nico M van Straalen, Dick Roelofs Journal of Biology 2008, 7:19 (14 July 2008)
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69.
152 Accesses
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Adaptation by introgression
Michael L Arnold, Noland H Martin Journal of Biology 2009, 8:82 (13 October 2009)
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70.
151 Accesses
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Limb regeneration revisited
Jessica L Whited, Clifford J Tabin Journal of Biology 2009, 8:5 (13 January 2009)
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71.
149 Accesses
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The 'stem cell' concept: is it holding us back?
Arthur D Lander Journal of Biology 2009, 8:70 (21 September 2009)
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Editor’s summary
Arthur Lander argues that the molecular definition of a stem cell is a mirage and 'stemness' is an emergent property of cells in their physiological context, so that the current concept is arguably an obstacle to research.
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72.
148 Accesses
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The cattle genome reveals its secrets
David W Burt Journal of Biology 2009, 8:36 (24 April 2009)
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Editor’s summary
Burt discusses the impact of the recently sequenced Bovine genome on our understanding of bovine phylogeny and the genomics of domestication.
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73.
146 Accesses
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Regulation of metabolism in Caenorhabditis elegans longevity
Marco Gallo, Donald L Riddle Journal of Biology 2010, 9:7 (10 February 2010)
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Editor’s summary
A metabolomic quest for universals in the control of lifespan recently reported in BMC Biology implicates branched-chain amino acid pools. Gallo and Riddle review the lessons from C.elegans in research on longevity, and discuss the implications of the metabolomic research.
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74.
145 Accesses
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The THO complex as a key mRNP biogenesis factor in development and cell differentiation
Sonia Jimeno, Andrés Aguilera Journal of Biology 2010, 9:6 (28 January 2010)
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Editor’s summary
The THO complex is implicated in RNA export from the nucleus, but exactly how is not clear. Jimeno and Aguilera discuss a new report on the THOC5 subunit in BMC Biology that suggests a role in differentiation.
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75.
145 Accesses
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Suppression of adaptive immunity to heterologous antigens during Plasmodium infection through hemozoin-induced failure of dendritic cell function
Owain R Millington, Caterina Di Lorenzo, R Phillips, Paul Garside, James M Brewer Journal of Biology 2006, 5:5 (12 April 2006)
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Editor’s summary
Hemozoin pigment, released during malarial infection, is now known to cause dendritic cell failure and subsequent host immunosupression, explaining why people with malaria become prone to infection and respond poorly to vaccines.
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76.
143 Accesses
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TBP2 is a general transcription factor specialized for female germ cells
Ferenc Müller, Làszlò Tora Journal of Biology 2009, 8:97 (30 November 2009)
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Editor’s summary
Mueller and Tora discuss a BMC Biology paper that shows that TBP2 is highly similar to TATA binding proteins but is an oocyte-specific factor and is indispensable for female germ cell development in vertebrates.
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77.
140 Accesses
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Combined optical trapping and single-molecule fluorescence
Matthew J Lang, Polly M Fordyce, Steven M Block Journal of Biology 2003, 2:6 (24 February 2003)
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78.
138 Accesses
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Ockham's broom: A new series
Miranda Robertson Journal of Biology 2009, 8:79 (16 October 2009)
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79.
139 Accesses
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The phosphatidylserine receptor has essential functions during embryogenesis but not in apoptotic cell removal
Jens Böse, Achim D Gruber, Laura Helming, Stefanie Schiebe, Ivonne Wegener, Martin Hafner, Marianne Beales, Frank Köntgen, Andreas Lengeling Journal of Biology 2004, 3:15 (23 August 2004)
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Editor’s summary
The phosphatidylserine receptor is not needed for the recognition of dying cells as previously thought, and instead plays a role in the differentiation of a wide range of tissues during embryogenesis.
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80.
139 Accesses
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RNA interference in nematodes and the chance that favored Sydney Brenner
Marie-Anne Félix Journal of Biology 2008, 7:34 (13 November 2008)
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81.
136 Accesses
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Electrical protein detection in cell lysates using high-density peptide-aptamer microarrays
David Evans, Steven Johnson, Sophie Laurenson, A Giles Davies, Paul Ko Ferrigno, Christoph Wälti Journal of Biology 2008, 7:3 (31 January 2008)
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Editor’s summary
Specific detection of protein isoforms in whole cell lysates is now more efficient with the arrival of a label-free electronic sensing system consisting of immobilized peptide aptamers on individual gold electrodes at the micron scale.
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82.
136 Accesses
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The nature of cell-cycle checkpoints: facts and fallacies
Alexey Khodjakov, Conly L Rieder Journal of Biology 2009, 8:88 (16 November 2009)
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Editor’s summary
The development of the checkpoint concept was a landmark in the understanding of cell cycle control, but Alexey Khodjakov and Conly Rieder argue that it is widely misunderstood, to the detriment of progress in cell cycle research.
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83.
133 Accesses
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Environmental stress and the effects of mutation
Santiago F Elena, J Arjan GM de Visser Journal of Biology 2003, 2:12 (26 June 2003)
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84.
134 Accesses
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Dishevelled and Wnt signaling: is the nucleus the final frontier?
Raymond Habas, Igor B Dawid Journal of Biology 2005, 4:2 (17 February 2005)
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85.
132 Accesses
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Evidence for large domains of similarly expressed genes in the Drosophila genome
Paul T Spellman, Gerald M Rubin Journal of Biology 2002, 1:5 (18 June 2002)
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86.
132 Accesses
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How chemotherapy damages the central nervous system
Christina A Meyers Journal of Biology 2008, 7:11 (22 April 2008)
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87.
128 Accesses
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Q&A: What are pharmacological chaperones and why are they interesting?
Dagmar Ringe, Gregory A Petsko Journal of Biology 2009, 8:80 (13 October 2009)
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Editor’s summary
Small molecules that stabilize mutant proteins with high specificity can be used to treat protein misfolding and metabolic diseases: in a Q&A highlighting recent successes, Dagmar Ringe and Gregory Petsko explain how.
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88.
127 Accesses
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Nuclear localization is required for Dishevelled function in Wnt/β-catenin signaling
Keiji Itoh, Barbara K Brott, Gyu-Un Bae, Marianne J Ratcliffe, Sergei Y Sokol Journal of Biology 2005, 4:3 (15 February 2005)
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Editor’s summary
Dishevelled, a key player in the Wnt/beta-catenin signalling pathway, doesn't only function in the cytoplasm and at the cell membrane, but must be imported into the nucleus to perform at least one key aspect of its function.
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89.
125 Accesses
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Endophilins interact with Moloney murine leukemia virus Gag and modulate virion production
Margaret Q Wang, Wankee Kim, Guangxia Gao, Ted A Torrey, Herbert C Morse, Pietro De Camilli, Stephen P Goff Journal of Biology 2003, 3:4 (4 December 2003)
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90.
125 Accesses
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The gene complement of the ancestral bilaterian - was Urbilateria a monster?
David J Miller, Eldon E Ball Journal of Biology 2009, 8:89 (19 November 2009)
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Editor’s summary
Bilateral animals have selectively shed genes as they evolved from their hypothetical ancestor, Urbilateria. Miller and Ball review this genomic history and ask if a recent paper in BMC Evolutionary Biology points to an ancestral worm.
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91.
125 Accesses
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Reprogramming of the non-coding transcriptome during brain development
Saba Valadkhan, Timothy W Nilsen Journal of Biology 2010, 9:5 (5 February 2010)
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Editor’s summary
Valadkhan and Nilsen discuss the mystery of long noncoding RNAs and a recent global expression study in BMC Neuroscience that provides a platform for answering fundamental questions about their role in the development of the brain.
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92.
124 Accesses
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Colugos: obscure mammals glide into the evolutionary limelight
Robert D Martin Journal of Biology 2008, 7:13 (1 May 2008)
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93.
124 Accesses
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Vernalization in cereals
Elizabeth S Dennis, W James Peacock Journal of Biology 2009, 8:57 (22 June 2009)
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Editor’s summary
Elizabeth Dennis and James Peacock review recent advances in the molecular basis of the vernalization response that, with the increase in day length at the end of the winter season, triggers flowering.
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94.
124 Accesses
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Cryptic biodiversity in a changing world
Luciano B Beheregaray, Adalgisa Caccone Journal of Biology 2007, 6:9 (21 December 2007)
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95.
121 Accesses
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A quantitative analysis of the mechanism that controls body size in Manduca sexta
HF Nijhout, G Davidowitz, DA Roff Journal of Biology 2006, 5:16 (2 August 2006)
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Editor’s summary
Final body size in the moth Manduca sexta can be predicted from the juvenile caterpillar by modeling three key growth measurements to reveal how growth rate, nutrition and temperature determine eventual body size.
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96.
119 Accesses
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Aquaglyceroporins: ancient channels for metalloids
Hiranmoy Bhattacharjee, Rita Mukhopadhyay, Saravanamuthu Thiyagarajan, Barry P Rosen Journal of Biology 2008, 7:33 (7 November 2008)
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97.
119 Accesses
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Genome degeneration affects both extracellular and intracellular bacterial endosymbionts
Heike Feldhaar, Roy Gross Journal of Biology 2009, 8:31 (6 April 2009)
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Editor’s summary
Feldhaar and Gross discuss a new study in BMC Biology that suggests extracellular endosymbionts, like obligate intracellular bacteria, lose essential genes and become slaves to their hosts.
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98.
119 Accesses
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Forward genetics in Tribolium castaneum: opening new avenues of research in arthropod biology
Andrew D Peel Journal of Biology 2009, 8:106 (30 December 2009)
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Editor’s summary
Peel discusses the merits of the flour beetle over the fruit fly as a new arthropod model organism and describes how a new mutagenesis screen published in BMC Biology increases the usefulness of this creature.
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99.
118 Accesses
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Adaptive evolution of centromere proteins in plants and animals
Paul B Talbert, Terri D Bryson, Steven Henikoff Journal of Biology 2004, 3:18 (31 August 2004)
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Editor’s summary
Centromere-binding proteins, like the DNA they bind, are rapidly evolving, a remarkable finding given that they are essential for every cell division and so would be expected to be very highly conserved.
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100.
116 Accesses
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At the crossroads: AMP-activated kinase and the LKB1 tumor suppressor link cell proliferation to metabolic regulation
John M Kyriakis Journal of Biology 2003, 2:26 (22 October 2003)
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