The functional landscape of mouse gene expression.

Zhang W, Morris QD, Chang R, Shai O, Bakowski MA, Mitsakakis N, Mohammad N, Robinson MD, Zirngibl R, Somogyi E, Laurin N, Eftekharpour E, Sat E, Grigull J, Pan Q, Peng WT, Krogan N, Greenblatt J, Fehlings M, van der Kooy D, Aubin J, Bruneau BG, Rossant J, Blencowe BJ, Frey BJ, Hughes TR.

J Biol. 2004;3(5):21. Epub 2004 Dec 6.

PMID: 15588312 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.

Kim SY, Kim Y.

BMC Bioinformatics. 2006 Jul 4;7:330.

PMID: 16817975 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Microarray-based discovery of highly expressed olfactory mucosal genes: potential roles in the various functions of the olfactory system.

Genter MB, Van Veldhoven PP, Jegga AG, Sakthivel B, Kong S, Stanley K, Witte DP, Ebert CL, Aronow BJ.

Physiol Genomics. 2003 Dec 16;16(1):67-81.

PMID: 14570983 [PubMed - indexed for MEDLINE]

Related Articles

Where are we in genomics?

Hocquette JF.

J Physiol Pharmacol. 2005 Jun;56 Suppl 3:37-70. Review.

PMID: 16077195 [PubMed - indexed for MEDLINE]

Related Articles

Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks.

Wolfe CJ, Kohane IS, Butte AJ.

BMC Bioinformatics. 2005 Sep 14;6:227.

PMID: 16162296 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Development of a cDNA array for chicken gene expression analysis.

Burnside J, Neiman P, Tang J, Basom R, Talbot R, Aronszajn M, Burt D, Delrow J.

BMC Genomics. 2005 Feb 4;6(1):13.

PMID: 15694003 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

FunnyBase: a systems level functional annotation of Fundulus ESTs for the analysis of gene expression.

Paschall JE, Oleksiak MF, VanWye JD, Roach JL, Whitehead JA, Wyckoff GJ, Kolell KJ, Crawford DL.

BMC Genomics. 2004 Dec 20;5(1):96.

PMID: 15610557 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Cross-species transcriptional profiles establish a functional portrait of embryonic stem cells.

Sun Y, Li H, Liu Y, Shin S, Mattson MP, Rao MS, Zhan M.

Genomics. 2007 Jan;89(1):22-35. Epub 2006 Oct 19.

PMID: 17055697 [PubMed - indexed for MEDLINE]

Related Articles

Towards precise classification of cancers based on robust gene functional expression profiles.

Guo Z, Zhang T, Li X, Wang Q, Xu J, Yu H, Zhu J, Wang H, Wang C, Topol EJ, Wang Q, Rao S.

BMC Bioinformatics. 2005 Mar 17;6:58.

PMID: 15774002 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

In silico identification and comparative analysis of differentially expressed genes in human and mouse tissues.

Pao SY, Lin WL, Hwang MJ.

BMC Genomics. 2006 Apr 21;7:86.

PMID: 16626500 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling.

Fang H, Tong W, Perkins R, Shi L, Hong H, Cao X, Xie Q, Yim SH, Ward JM, Pitot HC, Dragan YP.

BMC Bioinformatics. 2005 Jul 15;6 Suppl 2:S6.

PMID: 16026603 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Extensive and divergent circadian gene expression in liver and heart.

Storch KF, Lipan O, Leykin I, Viswanathan N, Davis FC, Wong WH, Weitz CJ.

Nature. 2002 May 2;417(6884):78-83. Epub 2002 Apr 21. Erratum in: Nature 2002 Aug 8;418(6898):665.

PMID: 11967526 [PubMed - indexed for MEDLINE]

Related Articles

Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.

PMID: 15748298 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Genomic approaches that aid in the identification of transcription factor target genes.

Kirmizis A, Farnham PJ.

Exp Biol Med (Maywood). 2004 Sep;229(8):705-21. Review.

PMID: 15337825 [PubMed - indexed for MEDLINE]

Related Articles

Tissue-specific mRNA expression profiling in grape berry tissues.

Grimplet J, Deluc LG, Tillett RL, Wheatley MD, Schlauch KA, Cramer GR, Cushman JC.

BMC Genomics. 2007 Jun 21;8:187.

PMID: 17584945 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes.

Lee S, Kohane I, Kasif S.

BMC Genomics. 2005 Nov 27;6:168.

PMID: 16309559 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Target gene identification from expression array data by promoter analysis.

Werner T.

Biomol Eng. 2001 Mar;17(3):87-94. Review.

PMID: 11222983 [PubMed - indexed for MEDLINE]

Related Articles

Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals.

Nelander S, Larsson E, Kristiansson E, Månsson R, Nerman O, Sigvardsson M, Mostad P, Lindahl P.

BMC Genomics. 2005 May 9;6(1):68.

PMID: 15882449 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays.

Bono H, Yagi K, Kasukawa T, Nikaido I, Tominaga N, Miki R, Mizuno Y, Tomaru Y, Goto H, Nitanda H, Shimizu D, Makino H, Morita T, Fujiyama J, Sakai T, Shimoji T, Hume DA, Hayashizaki Y, Okazaki Y; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1318-23.

PMID: 12819129 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

All systems GO for understanding mouse gene function.

Holmes C, Brown SD.

J Biol. 2004;3(5):20. Epub 2004 Dec 17. Review.

PMID: 15610553 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC