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Items 1 - 20 of 139
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1:

Growth control of the eukaryote cell: a systems biology study in yeast.

Castrillo JI, Zeef LA, Hoyle DC, Zhang N, Hayes A, Gardner DC, Cornell MJ, Petty J, Hakes L, Wardleworth L, Rash B, Brown M, Dunn WB, Broadhurst D, O'Donoghue K, Hester SS, Dunkley TP, Hart SR, Swainston N, Li P, Gaskell SJ, Paton NW, Lilley KS, Kell DB, Oliver SG.

J Biol. 2007;6(2):4.

PMID: 17439666 [PubMed - indexed for MEDLINE]

2:

Multilevel regulation of growth rate in yeast revealed using systems biology.

Ramanathan A, Schreiber SL.

J Biol. 2007;6(2):3. Review.

PMID: 17472733 [PubMed - indexed for MEDLINE]

3:

Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.

Daran-Lapujade P, Jansen ML, Daran JM, van Gulik W, de Winde JH, Pronk JT.

J Biol Chem. 2004 Mar 5;279(10):9125-38. Epub 2003 Nov 20.

PMID: 14630934 [PubMed - indexed for MEDLINE]

4:

Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes.

de Groot MJ, Daran-Lapujade P, van Breukelen B, Knijnenburg TA, de Hulster EA, Reinders MJ, Pronk JT, Heck AJ, Slijper M.

Microbiology. 2007 Nov;153(Pt 11):3864-78.

PMID: 17975095 [PubMed - indexed for MEDLINE]

5:

Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast.

Balaji S, Babu MM, Iyer LM, Luscombe NM, Aravind L.

J Mol Biol. 2006 Jun 30;360(1):213-27. Epub 2006 May 3.

PMID: 16762362 [PubMed - indexed for MEDLINE]

6:

Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: a three factor design.

Fazio A, Jewett MC, Daran-Lapujade P, Mustacchi R, Usaite R, Pronk JT, Workman CT, Nielsen J.

BMC Genomics. 2008 Jul 18;9:341.

PMID: 18638364 [PubMed - indexed for MEDLINE]

7:

Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae.

Regenberg B, Grotkjaer T, Winther O, Fausbøll A, Akesson M, Bro C, Hansen LK, Brunak S, Nielsen J.

Genome Biol. 2006;7(11):R107.

PMID: 17105650 [PubMed - indexed for MEDLINE]

8:

From genomes to systems: the path with yeast.

Oliver SG.

Philos Trans R Soc Lond B Biol Sci. 2006 Mar 29;361(1467):477-82. Review.

PMID: 16524836 [PubMed - indexed for MEDLINE]

9:

Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae.

Cakir T, Kirdar B, Onsan ZI, Ulgen KO, Nielsen J.

BMC Syst Biol. 2007 Mar 27;1:18.

PMID: 17408508 [PubMed - indexed for MEDLINE]

10:

Monitoring of transcriptional regulation in Pichia pastoris under protein production conditions.

Gasser B, Maurer M, Rautio J, Sauer M, Bhattacharyya A, Saloheimo M, Penttilä M, Mattanovich D.

BMC Genomics. 2007 Jun 19;8:179.

PMID: 17578563 [PubMed - indexed for MEDLINE]

11:

The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to those of Saccharomyces cerevisiae and Schizosaccharomyces pombe.

Miranda-Saavedra D, Stark MJ, Packer JC, Vivares CP, Doerig C, Barton GJ.

BMC Genomics. 2007 Sep 4;8:309.

PMID: 17784954 [PubMed - indexed for MEDLINE]

12:

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.

PMID: 12399584 [PubMed - indexed for MEDLINE]

13:

Yeast genomic expression patterns in response to low-shear modeled microgravity.

Sheehan KB, McInnerney K, Purevdorj-Gage B, Altenburg SD, Hyman LE.

BMC Genomics. 2007 Jan 3;8:3.

PMID: 17201921 [PubMed - indexed for MEDLINE]

14:

Metabolic engineering under uncertainty--II: analysis of yeast metabolism.

Wang L, Hatzimanikatis V.

Metab Eng. 2006 Mar;8(2):142-59. Epub 2006 Jan 18.

PMID: 16413809 [PubMed - indexed for MEDLINE]

15:

Identification of flux regulation coefficients from elementary flux modes: A systems biology tool for analysis of metabolic networks.

Nookaew I, Meechai A, Thammarongtham C, Laoteng K, Ruanglek V, Cheevadhanarak S, Nielsen J, Bhumiratana S.

Biotechnol Bioeng. 2007 Aug 15;97(6):1535-49.

PMID: 17238207 [PubMed - indexed for MEDLINE]

16:

Acclimation of Saccharomyces cerevisiae to low temperature: a chemostat-based transcriptome analysis.

Tai SL, Daran-Lapujade P, Walsh MC, Pronk JT, Daran JM.

Mol Biol Cell. 2007 Dec;18(12):5100-12. Epub 2007 Oct 10.

PMID: 17928405 [PubMed - indexed for MEDLINE]

17:

Systems analyses reveal two chaperone networks with distinct functions in eukaryotic cells.

Albanèse V, Yam AY, Baughman J, Parnot C, Frydman J.

Cell. 2006 Jan 13;124(1):75-88.

PMID: 16413483 [PubMed - indexed for MEDLINE]

18:

Comparative analysis of cell cycle regulated genes in eukaryotes.

Dyczkowski J, Vingron M.

Genome Inform. 2005;16(1):125-31.

PMID: 16362914 [PubMed - indexed for MEDLINE]

19:

A systems biology approach to study glucose repression in the yeast Saccharomyces cerevisiae.

Westergaard SL, Oliveira AP, Bro C, Olsson L, Nielsen J.

Biotechnol Bioeng. 2007 Jan 1;96(1):134-45.

PMID: 16878332 [PubMed - indexed for MEDLINE]

20:

Functional genomics identifies TOR-regulated genes that control growth and division.

Guertin DA, Guntur KV, Bell GW, Thoreen CC, Sabatini DM.

Curr Biol. 2006 May 23;16(10):958-70.

PMID: 16713952 [PubMed - indexed for MEDLINE]

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